Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   FOC88_RS06405 Genome accession   NZ_CP053934
Coordinates   1101435..1101869 (+) Length   144 a.a.
NCBI ID   WP_000811492.1    Uniprot ID   A0A0G8EA73
Organism   Bacillus thuringiensis strain FDAARGOS_794     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1096435..1106869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC88_RS06385 (FOC88_06385) - 1097324..1098487 (-) 1164 WP_000434592.1 aminotransferase A -
  FOC88_RS06390 (FOC88_06390) - 1098610..1098810 (-) 201 WP_000929284.1 hypothetical protein -
  FOC88_RS06395 (FOC88_06395) kinB 1099121..1100395 (+) 1275 WP_000420390.1 sporulation sensor histidine kinase KinB -
  FOC88_RS06400 (FOC88_06400) - 1100449..1101198 (-) 750 WP_000388464.1 DUF3967 domain-containing protein -
  FOC88_RS06405 (FOC88_06405) nucA/comI 1101435..1101869 (+) 435 WP_000811492.1 DNA-entry nuclease Machinery gene
  FOC88_RS06410 (FOC88_06410) comJ 1101906..1102295 (+) 390 WP_000424033.1 competence protein ComJ -
  FOC88_RS06415 (FOC88_06415) metE 1102332..1104620 (-) 2289 WP_001007635.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  FOC88_RS06420 (FOC88_06420) - 1105545..1106102 (-) 558 WP_042510888.1 PadR family transcriptional regulator -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16012.35 Da        Isoelectric Point: 8.4331

>NTDB_id=449154 FOC88_RS06405 WP_000811492.1 1101435..1101869(+) (nucA/comI) [Bacillus thuringiensis strain FDAARGOS_794]
MKQLKGIIISIIAILSILVAVYEVLVPEETSTKKTNAYDQVLEFPKERYPETGKHITDAIKEGHSEVCTIDRGGAADRRK
LSLAPYPSKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFDVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=449154 FOC88_RS06405 WP_000811492.1 1101435..1101869(+) (nucA/comI) [Bacillus thuringiensis strain FDAARGOS_794]
ATGAAGCAATTAAAAGGTATTATAATTTCAATTATTGCAATTCTTTCTATTTTAGTAGCGGTTTATGAAGTACTTGTTCC
AGAGGAAACAAGTACAAAAAAAACAAATGCGTATGATCAAGTTCTAGAATTTCCGAAAGAGAGATATCCAGAAACAGGGA
AACATATTACGGATGCGATAAAGGAAGGACATTCAGAAGTTTGTACAATCGACCGTGGTGGCGCTGCGGATAGAAGAAAG
TTATCGTTAGCTCCATACCCATCAAAAAAAGGGTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGCGGAAA
AGGAGCACATATCGAATATATAAGTCCAGCAGATAACCGCGGAGCAGGGTCTTGGGTAGGAAATAAGTTAGATAAATACC
CAGATGGTACGCGTGTGAAATTTGACGTAAAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0G8EA73

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

70.796

78.472

0.556