Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   FOC88_RS05575 Genome accession   NZ_CP053934
Coordinates   953954..954748 (+) Length   264 a.a.
NCBI ID   WP_003161566.1    Uniprot ID   P52928
Organism   Bacillus thuringiensis strain FDAARGOS_794     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 948954..959748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC88_RS05560 (FOC88_05560) argR 949793..950242 (+) 450 WP_001032581.1 arginine repressor ArgR -
  FOC88_RS05565 (FOC88_05565) recN 950510..952249 (+) 1740 WP_000947757.1 DNA repair protein RecN Machinery gene
  FOC88_RS05570 (FOC88_05570) spoIVB 952368..953666 (+) 1299 WP_002037056.1 SpoIVB peptidase -
  FOC88_RS05575 (FOC88_05575) spo0A 953954..954748 (+) 795 WP_003161566.1 sporulation transcription factor Spo0A Regulator
  FOC88_RS05580 (FOC88_05580) - 955046..956572 (+) 1527 WP_042510872.1 glycosyltransferase family 39 protein -
  FOC88_RS05585 (FOC88_05585) - 956740..956886 (-) 147 WP_001247671.1 YycC family protein -
  FOC88_RS05590 (FOC88_05590) - 956937..957665 (+) 729 WP_017560059.1 glycerophosphodiester phosphodiesterase -
  FOC88_RS05595 (FOC88_05595) - 957714..957947 (-) 234 WP_001190187.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29440.17 Da        Isoelectric Point: 7.4718

>NTDB_id=449153 FOC88_RS05575 WP_003161566.1 953954..954748(+) (spo0A) [Bacillus thuringiensis strain FDAARGOS_794]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLKDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLRQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANATIKRPLPSFRSATTVDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=449153 FOC88_RS05575 WP_003161566.1 953954..954748(+) (spo0A) [Bacillus thuringiensis strain FDAARGOS_794]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTAGTATCAATGCTAGAGAGTTATGTAGCTGCTCAAGA
TGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAATTTATTAAAAGATAAGCAGCCGGATGTACTCG
TATTGGATATTATTATGCCACATTTAGATGGTTTAGCTGTACTAGAGAAAATGCGACATATTGAAAGGTTAAGACAGCCT
AGCGTAATTATGTTGACAGCATTTGGACAAGAAGATGTGACGAAAAAAGCAGTTGACTTAGGTGCTTCATATTTCATATT
AAAACCATTTGATATGGAAAATTTAACGAGTCATATTCGTCAAGTGAGCGGTAAGGCAAACGCTACTATTAAACGTCCAC
TGCCATCTTTCCGATCAGCAACAACAGTAGATGGAAAACCGAAAAATTTAGACGCGAGCATTACGAGTATCATTCATGAA
ATTGGTGTGCCTGCTCATATTAAAGGGTACATGTACTTAAGGGAAGCAATTTCTATGGTGTACAATGACATTGAATTACT
TGGATCTATTACGAAAGTATTGTATCCAGATATCGCGAAGAAATATAATACAACAGCAAGCCGCGTTGAGCGTGCAATCC
GTCACGCAATTGAAGTAGCATGGAGTCGTGGGAATATTGATTCTATTTCGTCCTTATTCGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAACTCCGAGTTTATTGCAATGGTTGCGGATAAGCTTAGACTTGAACATAAGGCTAGCTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P52928

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818