Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   FOC88_RS05215 Genome accession   NZ_CP053934
Coordinates   899957..901000 (+) Length   347 a.a.
NCBI ID   WP_001013197.1    Uniprot ID   A0AAE9TCD1
Organism   Bacillus thuringiensis strain FDAARGOS_794     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 894957..906000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC88_RS05180 (FOC88_05180) - 895196..895570 (+) 375 WP_001012351.1 nucleoside 2-deoxyribosyltransferase -
  FOC88_RS05185 (FOC88_05185) - 895650..896138 (+) 489 WP_042510864.1 hypothetical protein -
  FOC88_RS05190 (FOC88_05190) - 896175..896486 (-) 312 WP_001093243.1 hypothetical protein -
  FOC88_RS05195 (FOC88_05195) - 896739..896954 (+) 216 WP_001008320.1 DUF3912 family protein -
  FOC88_RS05200 (FOC88_05200) - 897186..898580 (-) 1395 WP_001094329.1 L-cystine transporter -
  FOC88_RS05205 (FOC88_05205) - 898688..898930 (-) 243 WP_000440711.1 DUF2626 domain-containing protein -
  FOC88_RS05210 (FOC88_05210) - 899056..899751 (-) 696 WP_000434117.1 metalloregulator ArsR/SmtB family transcription factor -
  FOC88_RS05215 (FOC88_05215) comGA 899957..901000 (+) 1044 WP_001013197.1 competence protein ComGA Machinery gene
  FOC88_RS05220 (FOC88_05220) comGB 900993..902024 (+) 1032 WP_000471907.1 comG operon protein ComGB -
  FOC88_RS05225 (FOC88_05225) comGC 902036..902335 (+) 300 WP_001178696.1 comG operon protein ComGC -
  FOC88_RS05230 (FOC88_05230) comGD 902332..902787 (+) 456 WP_000810395.1 comG operon protein ComGD -
  FOC88_RS05235 (FOC88_05235) comGE 902780..903082 (+) 303 WP_000829456.1 competence type IV pilus minor pilin ComGE -
  FOC88_RS05240 (FOC88_05240) comGF 903052..903522 (+) 471 WP_000923094.1 competence type IV pilus minor pilin ComGF -
  FOC88_RS05245 (FOC88_05245) comGG 903519..903890 (+) 372 WP_001231192.1 competence type IV pilus minor pilin ComGG -
  FOC88_RS05250 (FOC88_05250) - 904066..904716 (+) 651 WP_000183878.1 2OG-Fe(II) oxygenase -
  FOC88_RS05255 (FOC88_05255) aroK 904837..905334 (+) 498 WP_000836643.1 shikimate kinase AroK -
  FOC88_RS05260 (FOC88_05260) - 905373..905573 (+) 201 WP_000106085.1 YqzE family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39397.95 Da        Isoelectric Point: 9.0635

>NTDB_id=449151 FOC88_RS05215 WP_001013197.1 899957..901000(+) (comGA) [Bacillus thuringiensis strain FDAARGOS_794]
MNGIESFANMILKEACRVQASDLHIVPRQKDVVVQLRIGKDLMTKYCIEKEFGEKLVSHFKFLASMDIGERRKPQNGSLY
LQMDGQEVYLRLSTLPTVYQESLVIRLHLQASIQPLSHLSLFPSTAKILLSFLRYSHGLLVFTGPTGSGKTTTMYALLEV
IRKKKTRRIVTLEDPVEKRNDDVLQIQINEKAGITYEAGLKAILRHDPDVILVGEIRDEETAKIAIRASLTGHLVMTTLH
TNDARGAILRFMDFGITRQEIEQSLLAIAAQRLVELKCPFCKRKCSTLCKSMRQVRQASIYELLYGYELKQAIKEANGEC
VTYKHETLQSSIRKGYALGFLEEDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=449151 FOC88_RS05215 WP_001013197.1 899957..901000(+) (comGA) [Bacillus thuringiensis strain FDAARGOS_794]
ATGAATGGAATTGAAAGCTTTGCGAATATGATTTTGAAAGAAGCGTGCAGGGTACAAGCGTCGGACTTACATATTGTGCC
CCGGCAGAAGGATGTAGTGGTTCAGCTGCGTATAGGAAAAGATTTAATGACGAAATACTGTATTGAAAAGGAATTTGGAG
AAAAACTTGTTTCACACTTTAAATTTTTAGCATCTATGGATATAGGGGAGAGGCGGAAGCCACAAAATGGTTCACTGTAT
TTACAAATGGATGGACAAGAAGTGTATTTGCGCCTTTCCACGCTTCCAACCGTATACCAAGAAAGTCTCGTTATTCGTCT
TCATTTACAAGCATCTATTCAGCCGTTATCTCATCTTTCGTTATTTCCAAGTACAGCGAAGATACTACTTTCTTTTTTAC
GTTATTCTCATGGATTACTCGTATTTACTGGACCGACTGGTTCGGGGAAGACAACAACAATGTATGCATTATTAGAGGTA
ATTAGAAAAAAGAAAACACGTCGCATTGTTACACTGGAAGATCCAGTTGAAAAAAGAAATGACGATGTATTACAAATTCA
AATAAATGAAAAAGCAGGTATCACATATGAGGCTGGACTAAAGGCTATTTTGCGTCATGATCCAGATGTTATTTTAGTCG
GTGAAATTCGTGATGAAGAAACAGCGAAAATTGCTATAAGAGCAAGTTTGACTGGCCATTTAGTAATGACGACATTGCAT
ACGAATGATGCGAGAGGGGCGATACTTAGGTTCATGGATTTTGGCATAACGAGGCAAGAAATCGAACAATCTTTATTAGC
TATAGCTGCACAGCGACTTGTCGAATTAAAGTGTCCGTTTTGCAAAAGAAAGTGCTCAACTTTATGCAAATCAATGAGGC
AAGTAAGGCAAGCGAGTATTTATGAGTTGTTATATGGATATGAGTTAAAACAAGCGATTAAAGAAGCAAACGGGGAATGT
GTCACATACAAGCACGAAACATTACAATCTTCGATACGAAAAGGATACGCTTTAGGGTTTTTAGAAGAAGATGTTTATGT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

57.925

100

0.579