Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   FOC88_RS04950 Genome accession   NZ_CP053934
Coordinates   847974..848720 (+) Length   248 a.a.
NCBI ID   WP_000487010.1    Uniprot ID   Q81LT9
Organism   Bacillus thuringiensis strain FDAARGOS_794     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 842974..853720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC88_RS04920 (FOC88_04920) - 843263..845407 (+) 2145 WP_000946454.1 HD family phosphohydrolase -
  FOC88_RS04925 (FOC88_04925) ybeY 845404..845874 (+) 471 WP_000054692.1 rRNA maturation RNase YbeY -
  FOC88_RS04930 (FOC88_04930) - 845871..846224 (+) 354 WP_000715480.1 diacylglycerol kinase family protein -
  FOC88_RS04935 (FOC88_04935) - 846324..846722 (+) 399 WP_042510861.1 cytidine deaminase -
  FOC88_RS04940 (FOC88_04940) era 846715..847620 (+) 906 WP_001080241.1 GTPase Era -
  FOC88_RS04945 (FOC88_04945) - 847797..847940 (+) 144 WP_000883924.1 YqzL family protein -
  FOC88_RS04950 (FOC88_04950) recO 847974..848720 (+) 747 WP_000487010.1 DNA repair protein RecO Machinery gene
  FOC88_RS04955 (FOC88_04955) - 848828..849460 (+) 633 WP_000583759.1 helix-turn-helix transcriptional regulator -
  FOC88_RS04960 (FOC88_04960) - 849490..850302 (+) 813 WP_000368943.1 pyruvate, water dikinase regulatory protein -
  FOC88_RS04965 (FOC88_04965) - 850670..850825 (+) 156 WP_001179661.1 hypothetical protein -
  FOC88_RS04970 (FOC88_04970) dnaG 851156..852952 (+) 1797 WP_042510862.1 DNA primase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28665.22 Da        Isoelectric Point: 8.0540

>NTDB_id=449150 FOC88_RS04950 WP_000487010.1 847974..848720(+) (recO) [Bacillus thuringiensis strain FDAARGOS_794]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDQYRIPVGEAVHKLLRLFYHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=449150 FOC88_RS04950 WP_000487010.1 847974..848720(+) (recO) [Bacillus thuringiensis strain FDAARGOS_794]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTTTCAAG
AGAATTGGGTAAGGTAAGTGCAATGGCAAGAGGAGCGAAAAAACCGAAAAGTCGGTTAGCATCTGTTTCGCAACTTATGA
CACATGGTCATTTTCTTATTCAAATGGGATCTGGACTTGGAACTTTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAATTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCATATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGACACATGTGCGATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTTAGAGAGGGCGGTTTTCTGTGCTCACGTCATGCTGAGCAAGATCAGTATCGTATACCAGTGGG
GGAAGCCGTTCATAAATTATTGCGTCTTTTCTACCACTTCGATTTACATAGACTTGGCAATGTATCAGTGAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGGATTTATTTGAAATCAAGACGTTTCTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81LT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552