Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   FOC91_RS27330 Genome accession   NZ_CP053931
Coordinates   4983938..4984225 (-) Length   95 a.a.
NCBI ID   WP_000648331.1    Uniprot ID   A0A2A8KZX2
Organism   Bacillus cereus strain FDAARGOS_797     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4978938..4989225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC91_RS27300 (FOC91_27295) - 4979252..4979599 (+) 348 WP_000426313.1 DUF4257 domain-containing protein -
  FOC91_RS27305 (FOC91_27300) - 4979684..4979908 (+) 225 WP_000162601.1 hypothetical protein -
  FOC91_RS27310 (FOC91_27305) - 4980097..4981272 (-) 1176 WP_000832302.1 MFS transporter -
  FOC91_RS27315 (FOC91_27310) - 4981321..4982256 (-) 936 WP_000877933.1 aldo/keto reductase -
  FOC91_RS27320 (FOC91_27315) - 4982364..4982672 (+) 309 WP_001259894.1 helix-turn-helix transcriptional regulator -
  FOC91_RS27325 (FOC91_27320) - 4982713..4983663 (-) 951 WP_001089035.1 serine protease -
  FOC91_RS27330 (FOC91_27325) abrB 4983938..4984225 (-) 288 WP_000648331.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  FOC91_RS27335 (FOC91_27330) - 4984342..4986222 (-) 1881 WP_042512859.1 FtsX-like permease family protein -
  FOC91_RS27340 (FOC91_27335) nadE 4986494..4987312 (+) 819 WP_000174879.1 ammonia-dependent NAD(+) synthetase -
  FOC91_RS27345 (FOC91_27340) - 4987359..4987820 (-) 462 WP_000024996.1 NUDIX hydrolase -
  FOC91_RS27350 (FOC91_27345) - 4987852..4988050 (-) 199 Protein_5142 DUF4083 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10645.40 Da        Isoelectric Point: 6.3179

>NTDB_id=449138 FOC91_RS27330 WP_000648331.1 4983938..4984225(-) (abrB) [Bacillus cereus strain FDAARGOS_797]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=449138 FOC91_RS27330 WP_000648331.1 4983938..4984225(-) (abrB) [Bacillus cereus strain FDAARGOS_797]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTCGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516