Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   FOC91_RS15940 Genome accession   NZ_CP053931
Coordinates   2844090..2845133 (+) Length   347 a.a.
NCBI ID   WP_001013200.1    Uniprot ID   A0AA96SWA8
Organism   Bacillus cereus strain FDAARGOS_797     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2839090..2850133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC91_RS15905 (FOC91_15905) - 2839344..2839718 (+) 375 WP_001012350.1 nucleoside 2-deoxyribosyltransferase -
  FOC91_RS15910 (FOC91_15910) - 2839798..2840286 (+) 489 WP_000764279.1 hypothetical protein -
  FOC91_RS15915 (FOC91_15915) - 2840323..2840634 (-) 312 WP_001093243.1 hypothetical protein -
  FOC91_RS15920 (FOC91_15920) - 2840887..2841102 (+) 216 WP_001008320.1 DUF3912 family protein -
  FOC91_RS15925 (FOC91_15925) - 2841319..2842713 (-) 1395 WP_001094329.1 L-cystine transporter -
  FOC91_RS15930 (FOC91_15930) - 2842821..2843063 (-) 243 WP_000440711.1 DUF2626 domain-containing protein -
  FOC91_RS15935 (FOC91_15935) - 2843189..2843884 (-) 696 WP_000434117.1 metalloregulator ArsR/SmtB family transcription factor -
  FOC91_RS15940 (FOC91_15940) comGA 2844090..2845133 (+) 1044 WP_001013200.1 competence protein ComGA Machinery gene
  FOC91_RS15945 (FOC91_15945) comGB 2845126..2846157 (+) 1032 WP_001995198.1 comG operon protein ComGB -
  FOC91_RS15950 (FOC91_15950) comGC 2846169..2846468 (+) 300 WP_001178696.1 comG operon protein ComGC -
  FOC91_RS15955 (FOC91_15955) comGD 2846465..2846920 (+) 456 WP_000810393.1 comG operon protein ComGD -
  FOC91_RS15960 (FOC91_15960) comGE 2846913..2847215 (+) 303 WP_000829458.1 competence type IV pilus minor pilin ComGE -
  FOC91_RS15965 (FOC91_15965) comGF 2847185..2847655 (+) 471 WP_000923089.1 competence type IV pilus minor pilin ComGF -
  FOC91_RS15970 (FOC91_15970) comGG 2847652..2848023 (+) 372 WP_001231191.1 competence type IV pilus minor pilin ComGG -
  FOC91_RS15975 (FOC91_15975) - 2848199..2848849 (+) 651 WP_000183851.1 2OG-Fe(II) oxygenase -
  FOC91_RS15980 (FOC91_15980) aroK 2848970..2849467 (+) 498 WP_042512201.1 shikimate kinase AroK -
  FOC91_RS15985 (FOC91_15985) - 2849506..2849706 (+) 201 WP_000106084.1 YqzE family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39412.97 Da        Isoelectric Point: 9.2147

>NTDB_id=449126 FOC91_RS15940 WP_001013200.1 2844090..2845133(+) (comGA) [Bacillus cereus strain FDAARGOS_797]
MNGIESFANMILKEACRVQASDLHIVPRQKDVVVQLRIGKDLMTKYCIEKEFGEKLVSHFKFLASMDIGERRKPQNGSLY
LQMDGQEVYLRLSTLPTVYQESLVIRLHLQASIQPLSHLSLFPSTAKKLLSFLRYSHGLLVFTGPTGSGKTTTMYALLEV
IRKKKTRRIVTLEDPVEKRNDDVLQIQINEKAGITYEAGLKAILRHDPDVILVGEIRDEETAKIAIRASLTGHLVMTTLH
TNDARGAILRFMDFGITRQEIEQSLLAIAAQRLVELKCPFCKRKCSTLCKSMRQVRQASIYELLYGYELKQAIKEANGEC
VTYKHETLQSSIRKGYALGFLEEDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=449126 FOC91_RS15940 WP_001013200.1 2844090..2845133(+) (comGA) [Bacillus cereus strain FDAARGOS_797]
ATGAATGGAATTGAAAGCTTTGCGAATATGATTTTGAAAGAAGCGTGCAGGGTACAAGCGTCGGACTTACATATTGTGCC
CCGGCAGAAGGATGTAGTGGTTCAGCTGCGTATAGGAAAAGATTTAATGACGAAATATTGTATTGAAAAGGAATTTGGAG
AAAAACTTGTTTCACACTTTAAATTTTTAGCATCTATGGATATAGGGGAGAGGCGGAAGCCACAAAATGGTTCACTGTAT
TTACAAATGGATGGACAAGAAGTGTATTTGCGTCTTTCCACGCTTCCAACCGTATACCAAGAAAGTCTCGTTATTCGTCT
TCATTTACAAGCATCTATTCAGCCGTTATCTCATCTTTCGTTATTTCCAAGTACAGCGAAGAAACTACTTTCTTTTTTAC
GTTATTCTCATGGATTACTCGTATTTACTGGACCGACTGGTTCGGGGAAGACAACAACAATGTATGCATTATTAGAGGTA
ATTAGAAAAAAGAAAACACGTCGCATCGTTACACTGGAAGATCCAGTTGAAAAAAGAAATGACGATGTATTACAAATTCA
AATAAATGAAAAAGCAGGTATCACATATGAGGCTGGACTAAAGGCTATTTTGCGTCATGATCCAGATGTTATTTTAGTCG
GTGAAATTCGTGATGAAGAAACAGCGAAAATTGCTATAAGAGCAAGTTTGACTGGCCATTTAGTAATGACGACATTGCAT
ACGAATGATGCGAGAGGGGCGATACTTCGGTTCATGGATTTTGGCATAACGAGGCAAGAAATCGAACAATCTTTATTAGC
TATAGCTGCACAGCGACTTGTCGAATTAAAGTGTCCGTTTTGCAAAAGAAAGTGCTCAACTTTATGCAAATCAATGAGGC
AAGTAAGGCAAGCGAGTATTTATGAGTTGTTATATGGATATGAGTTAAAACAAGCGATTAAAGAAGCAAACGGGGAATGT
GTCACATACAAGCACGAAACATTACAATCTTCGATACGAAAAGGATACGCTTTAGGGTTTTTAGAAGAAGATGTTTATGT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

57.925

100

0.579
  pilB Vibrio campbellii strain DS40M4

35.977

100

0.366