Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   FOC91_RS09350 Genome accession   NZ_CP053931
Coordinates   1579833..1580117 (+) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus cereus strain FDAARGOS_797     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1574833..1585117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC91_RS09335 (FOC91_09335) rnmV 1575655..1576212 (-) 558 WP_000692830.1 ribonuclease M5 -
  FOC91_RS09340 (FOC91_09340) - 1576427..1577194 (-) 768 WP_000895823.1 TatD family hydrolase -
  FOC91_RS09345 (FOC91_09345) metG 1577360..1579342 (-) 1983 WP_000134147.1 methionine--tRNA ligase -
  FOC91_RS09350 (FOC91_09350) abrB 1579833..1580117 (+) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  FOC91_RS09355 (FOC91_09355) rsmI 1580138..1581013 (-) 876 WP_042513324.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  FOC91_RS09360 (FOC91_09360) - 1580982..1581272 (-) 291 WP_000414341.1 GIY-YIG nuclease family protein -
  FOC91_RS09365 (FOC91_09365) - 1581259..1581999 (-) 741 WP_001055350.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  FOC91_RS09370 (FOC91_09370) yabA 1582120..1582470 (-) 351 WP_000412056.1 DNA replication initiation control protein YabA -
  FOC91_RS09375 (FOC91_09375) - 1582485..1583312 (-) 828 WP_000272429.1 stage 0 sporulation family protein -
  FOC91_RS09380 (FOC91_09380) holB 1583318..1584301 (-) 984 WP_000169577.1 DNA polymerase III subunit delta' -
  FOC91_RS09385 (FOC91_09385) tmk 1584337..1584963 (-) 627 WP_000677233.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=449107 FOC91_RS09350 WP_000843036.1 1579833..1580117(+) (abrB) [Bacillus cereus strain FDAARGOS_797]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=449107 FOC91_RS09350 WP_000843036.1 1579833..1580117(+) (abrB) [Bacillus cereus strain FDAARGOS_797]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCACTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851