Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HP062_RS29040 Genome accession   NZ_CP053929
Coordinates   6364946..6365581 (+) Length   211 a.a.
NCBI ID   WP_010461893.1    Uniprot ID   A0A024E8F0
Organism   Pseudomonas sp. B14-6     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6359946..6370581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP062_RS29020 (HP062_29020) - 6360110..6361042 (+) 933 WP_010461902.1 ABC transporter ATP-binding protein -
  HP062_RS29025 (HP062_29025) - 6361039..6361818 (+) 780 WP_010461900.1 ABC transporter permease -
  HP062_RS29030 (HP062_29030) - 6361960..6362478 (-) 519 WP_010461897.1 DUF2062 domain-containing protein -
  HP062_RS29035 (HP062_29035) - 6362614..6364847 (+) 2234 Protein_5792 DNA internalization-related competence protein ComEC/Rec2 -
  HP062_RS29040 (HP062_29040) exbB 6364946..6365581 (+) 636 WP_010461893.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HP062_RS29045 (HP062_29045) - 6365578..6366009 (+) 432 WP_010461891.1 biopolymer transporter ExbD -
  HP062_RS29050 (HP062_29050) lpxK 6366009..6367019 (+) 1011 WP_010461890.1 tetraacyldisaccharide 4'-kinase -
  HP062_RS29055 (HP062_29055) - 6367045..6367229 (+) 185 Protein_5796 Trm112 family protein -
  HP062_RS29060 (HP062_29060) kdsB 6367226..6367990 (+) 765 WP_077748004.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HP062_RS29065 (HP062_29065) - 6367990..6368454 (+) 465 WP_010461884.1 low molecular weight protein-tyrosine-phosphatase -
  HP062_RS29070 (HP062_29070) murB 6368451..6369470 (+) 1020 WP_172792421.1 UDP-N-acetylmuramate dehydrogenase -
  HP062_RS29075 (HP062_29075) - 6369716..6370186 (+) 471 WP_172792422.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22883.09 Da        Isoelectric Point: 6.8770

>NTDB_id=449090 HP062_RS29040 WP_010461893.1 6364946..6365581(+) (exbB) [Pseudomonas sp. B14-6]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVVHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMGTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=449090 HP062_RS29040 WP_010461893.1 6364946..6365581(+) (exbB) [Pseudomonas sp. B14-6]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCGGCAATGGCGATCGTCGC
CGAGCGTCTCTGGACCCTGCGAGCCAGCCGTGTGACCCCGGAGCATTTGCTCGGGCAGGTCTGGGTGTGGATCAAGGACA
AACAGCTCAATAAAGAAAAACTCAAGGAACTGCGCGCCAACTCACCGTTGGGCGAGATCCTGGCGGCGGGCCTTGCCAAC
TCCAAACATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCACGGGTGGTTCATGAACTCGAACGCTATAT
CAATGCGCTGGGCACCATCGCCGCCATGGCCCCATTGCTGGGCCTGTTGGGTACGGTGCTGGGCATGATCGACATTTTCA
GCGCGTTCATGGGCACGGGCATGGGCACCAATGCCGCAGTGCTGGCGGGCGGTATCTCCAAGGCGCTGATCACTACGGCC
GCTGGCCTGATGGTCGGTATCCCGGCAGTATTCTTTCACCGATTCCTGCAACGCCGGATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTCGAAGTGGTTCAGGGCGACCGTGATGTGGACCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A024E8F0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.256

100

0.863