Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HQN50_RS25335 Genome accession   NZ_CP053922
Coordinates   5400721..5402082 (-) Length   453 a.a.
NCBI ID   WP_017002524.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain YD001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5395721..5407082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN50_RS25310 yjiA 5395908..5396912 (-) 1005 WP_003094852.1 GTPase -
  HQN50_RS25315 - 5396972..5397175 (-) 204 WP_003094856.1 YbdD/YjiX family protein -
  HQN50_RS25320 - 5397224..5399290 (-) 2067 WP_003094859.1 carbon starvation CstA family protein -
  HQN50_RS25325 - 5399628..5400134 (-) 507 WP_003094862.1 DUF3015 domain-containing protein -
  HQN50_RS25330 mapZ 5400337..5400714 (+) 378 WP_003094864.1 cyclic di-GMP-binding protein MapZ -
  HQN50_RS25335 radA 5400721..5402082 (-) 1362 WP_017002524.1 DNA repair protein RadA Machinery gene
  HQN50_RS25340 - 5402192..5402626 (+) 435 WP_003104889.1 CopD family protein -
  HQN50_RS25345 - 5402688..5402942 (-) 255 WP_003104887.1 YdcH family protein -
  HQN50_RS25350 - 5403017..5403568 (-) 552 WP_003121338.1 ankyrin repeat domain-containing protein -
  HQN50_RS25355 katB 5403622..5405163 (-) 1542 WP_003094881.1 catalase KatB -
  HQN50_RS25360 - 5405160..5405648 (-) 489 WP_169433242.1 hypothetical protein -
  HQN50_RS25365 mscL 5405691..5406104 (+) 414 WP_003104883.1 large-conductance mechanosensitive channel protein MscL -
  HQN50_RS25370 - 5406209..5406985 (-) 777 WP_003110878.1 ferredoxin--NADP reductase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48380.78 Da        Isoelectric Point: 6.8357

>NTDB_id=448994 HQN50_RS25335 WP_017002524.1 5400721..5402082(-) (radA) [Pseudomonas aeruginosa strain YD001]
MAKAKRMYGCTECGATFPKWAGQCADCGAWNTLVETVVEAAPSGSGRGGWAGQQANLKTLAEVSVEEMPRFTTGSAELDR
VLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLASRVPALYVTGEESQQQVAMRARRLSLPEDKLKVMTETSIETIIATA
RQEQPRVMVIDSIQTIFTEQLQSAPGGVAQVRESAAMLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFEGE
SDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEAVPGSVVMATWEGSRPMLVEVQALVDTSHLANP
RRVTLGLDQNRLAMLLAVLHRHGGIPTYDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSGEV
RPVPSGQERLKEAGKHGFKRAIVPLGNAPKEAPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=448994 HQN50_RS25335 WP_017002524.1 5400721..5402082(-) (radA) [Pseudomonas aeruginosa strain YD001]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGTGGCGCGACCTTCCCGAAATGGGCCGGCCAGTGCGCGGACTG
CGGGGCCTGGAACACCCTGGTGGAGACCGTCGTCGAGGCCGCGCCGAGCGGCTCCGGGCGCGGCGGCTGGGCCGGCCAGC
AGGCCAACCTGAAGACCCTGGCGGAGGTCAGCGTCGAGGAAATGCCGCGCTTCACGACCGGCTCCGCCGAACTGGACCGG
GTTCTCGGCGGCGGCCTGGTGGACGGTTCGGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCGACCATTCTCCT
GCAGACCCTTTGCAACCTGGCCAGCCGCGTCCCGGCGCTGTACGTCACCGGCGAGGAATCCCAGCAGCAGGTGGCGATGC
GCGCGCGGCGCCTGTCGTTGCCGGAAGACAAGCTCAAGGTGATGACCGAGACCAGCATCGAGACCATCATCGCCACCGCG
CGCCAGGAGCAGCCGCGGGTGATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAGTTGCAATCGGCGCCGGGCGG
CGTCGCCCAGGTCCGCGAGAGCGCCGCGATGCTGGTGCGCTATGCCAAGCAGAGCGGCACGGCGATCTTTCTGGTCGGCC
ACGTGACCAAGGAAGGCGCCCTGGCCGGCCCGCGGGTGCTCGAACACATGGTCGACACCGTACTGTATTTCGAGGGCGAA
TCAGACGGCCGCCTGCGCCTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTCAACGAACTGGGAGTGTTCGGCATGAC
CGACAAAGGCCTGAAGGAAGTGAGCAACCCTTCGGCGATCTTCCTCACGCGGGCCCAGGAAGCGGTGCCCGGCAGCGTGG
TGATGGCCACCTGGGAAGGCTCGCGACCGATGCTGGTGGAGGTCCAGGCGCTGGTCGACACCAGTCACCTGGCGAATCCG
CGGCGGGTGACCCTGGGCCTCGACCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCGGCACGGTGGTATCCCGAC
CTACGACCAGGACGTGTTCCTCAACGTGGTGGGTGGGGTCAAGGTGCTGGAAACCGCCTCCGACCTGGCGTTGATGGCGG
CGGTGATGTCCAGCCTGCGCAACCGCCCGCTGCCGCACGACCTGCTGGTGTTCGGCGAGGTCGGGCTGTCCGGCGAGGTG
CGTCCGGTGCCGAGCGGCCAGGAGCGCCTGAAGGAAGCCGGCAAGCATGGTTTCAAGCGTGCCATCGTACCCCTCGGCAA
CGCGCCGAAGGAGGCGCCGGCGGGATTGCAGGTGATCGCCGTGACGCGCCTCGAGCAGGCCCTGGACGCCCTCTTCGAGT
GA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(75-219)

Subunit ChlI of Mg-chelatase (ChlI)

(361-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.458

100

0.486
  radA Streptococcus pneumoniae Rx1

46.288

100

0.468
  radA Streptococcus pneumoniae D39

46.288

100

0.468
  radA Streptococcus pneumoniae R6

46.288

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.288

100

0.468
  radA Streptococcus mitis SK321

46.389

100

0.468
  radA Streptococcus mitis NCTC 12261

46.171

100

0.466