Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HQN50_RS10435 Genome accession   NZ_CP053922
Coordinates   2219180..2219815 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain YD001     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2214180..2224815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN50_RS10420 - 2214886..2216130 (+) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -
  HQN50_RS10425 - 2216218..2216751 (-) 534 WP_003143664.1 DUF2062 domain-containing protein -
  HQN50_RS10430 comA 2216882..2219107 (+) 2226 WP_023088195.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HQN50_RS10435 exbB 2219180..2219815 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HQN50_RS10440 - 2219812..2220252 (+) 441 WP_172792816.1 biopolymer transporter ExbD -
  HQN50_RS10445 lpxK 2220252..2221250 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  HQN50_RS10450 - 2221288..2221473 (+) 186 WP_003091157.1 Trm112 family protein -
  HQN50_RS10455 kdsB 2221473..2222237 (+) 765 WP_003106922.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HQN50_RS10460 - 2222237..2222701 (+) 465 WP_003106924.1 low molecular weight protein-tyrosine-phosphatase -
  HQN50_RS10465 murB 2222698..2223717 (+) 1020 WP_023088196.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=448978 HQN50_RS10435 WP_003091163.1 2219180..2219815(+) (exbB) [Pseudomonas aeruginosa strain YD001]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=448978 HQN50_RS10435 WP_003091163.1 2219180..2219815(+) (exbB) [Pseudomonas aeruginosa strain YD001]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81