Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   HPT07_RS19455 Genome accession   NZ_CP053917
Coordinates   4136226..4136750 (-) Length   174 a.a.
NCBI ID   WP_003116261.1    Uniprot ID   Q7WZP2
Organism   Pseudomonas aeruginosa strain PSE6684     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4130981..4139105 4136226..4136750 within 0


Gene organization within MGE regions


Location: 4130981..4139105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPT07_RS19435 (HPT07_19435) - 4130981..4131307 (-) 327 WP_016254060.1 PilY2 family type 4a fimbrial biogenesis protein -
  HPT07_RS19440 (HPT07_19440) - 4131310..4134786 (-) 3477 WP_023100239.1 pilus assembly protein -
  HPT07_RS19445 (HPT07_19445) - 4134800..4135405 (-) 606 WP_003116263.1 PilX N-terminal domain-containing pilus assembly protein -
  HPT07_RS19450 (HPT07_19450) - 4135402..4136217 (-) 816 WP_016254061.1 PilW family protein -
  HPT07_RS19455 (HPT07_19455) pilV 4136226..4136750 (-) 525 WP_003116261.1 type IV pilus modification protein PilV Machinery gene
  HPT07_RS19460 (HPT07_19460) - 4136760..4137248 (-) 489 WP_003141552.1 GspH/FimT family pseudopilin -
  HPT07_RS19465 (HPT07_19465) - 4137371..4137871 (-) 501 WP_016254062.1 GspH/FimT family pseudopilin -
  HPT07_RS19470 (HPT07_19470) thiO 4138011..4139105 (+) 1095 WP_003141551.1 glycine oxidase ThiO -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18763.51 Da        Isoelectric Point: 4.9113

>NTDB_id=448910 HPT07_RS19455 WP_003116261.1 4136226..4136750(-) (pilV) [Pseudomonas aeruginosa strain PSE6684]
MSRETGFSMIEVLVALVLISIGVLGMVAMQGRTIQYTQESVQRNAAAMLASDLMEIMRADPDAVLNLRAQLREDSVYYKA
KGSDFPAAPARCAPLPADAKERLGCWAQQASKDLPGASALLNSQFYICRSPTPGTCDNTKGSAIEIQVAWRAMDGACFNA
SDSTLCTYSVRSEL

Nucleotide


Download         Length: 525 bp        

>NTDB_id=448910 HPT07_RS19455 WP_003116261.1 4136226..4136750(-) (pilV) [Pseudomonas aeruginosa strain PSE6684]
ATGTCTCGAGAAACGGGTTTCAGCATGATCGAAGTACTGGTTGCTCTGGTGCTGATCAGCATTGGCGTACTGGGCATGGT
TGCCATGCAAGGGCGCACGATCCAGTACACGCAGGAGTCGGTACAACGCAATGCCGCAGCAATGCTTGCTAGCGACCTGA
TGGAAATAATGCGTGCGGACCCAGATGCCGTACTCAATCTACGCGCCCAACTACGCGAAGACTCGGTCTACTACAAGGCC
AAGGGCAGCGACTTTCCCGCAGCCCCAGCGCGCTGCGCGCCATTGCCAGCAGATGCTAAGGAACGTCTCGGCTGCTGGGC
CCAACAGGCCTCGAAAGACTTGCCGGGAGCCTCCGCACTCTTGAATAGCCAATTCTACATTTGTCGCAGCCCAACCCCGG
GTACCTGCGACAACACCAAAGGCTCGGCCATCGAAATCCAGGTTGCCTGGCGAGCCATGGATGGAGCGTGTTTCAACGCC
TCTGACTCCACCTTGTGCACCTACAGCGTCCGCTCCGAATTGTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7WZP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

59.429

100

0.598