Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GKZ68_RS15360 Genome accession   NZ_CP053908
Coordinates   3479188..3480588 (+) Length   466 a.a.
NCBI ID   WP_173116305.1    Uniprot ID   A0A7D3X8K0
Organism   Hymenobacter sp. BRD128     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3474188..3485588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKZ68_RS15345 (GKZ68_15340) - 3474891..3475280 (-) 390 WP_173116299.1 universal stress protein -
  GKZ68_RS15350 (GKZ68_15345) - 3475367..3476728 (-) 1362 WP_173116301.1 TolC family protein -
  GKZ68_RS15355 (GKZ68_15350) - 3476916..3479090 (+) 2175 WP_173116303.1 sigma 54-interacting transcriptional regulator -
  GKZ68_RS15360 (GKZ68_15355) radA 3479188..3480588 (+) 1401 WP_173116305.1 DNA repair protein RadA Machinery gene
  GKZ68_RS15365 (GKZ68_15360) - 3480839..3482410 (+) 1572 WP_173116307.1 redoxin domain-containing protein -
  GKZ68_RS15370 (GKZ68_15365) - 3482506..3483528 (+) 1023 WP_173116309.1 SPASM domain-containing protein -
  GKZ68_RS15375 (GKZ68_15370) - 3483553..3483894 (-) 342 WP_173116312.1 hypothetical protein -
  GKZ68_RS15380 (GKZ68_15375) - 3484010..3484201 (-) 192 WP_173116314.1 FeoB-associated Cys-rich membrane protein -
  GKZ68_RS15385 (GKZ68_15380) - 3484255..3485301 (-) 1047 WP_173116316.1 TlpA disulfide reductase family protein -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 50348.74 Da        Isoelectric Point: 6.3979

>NTDB_id=448857 GKZ68_RS15360 WP_173116305.1 3479188..3480588(+) (radA) [Hymenobacter sp. BRD128]
MAKARTVFFCQNCGAQSAKWIGRCPSCGEWNTYVEEVVQKETAATTTGQWKPASTVPGGNLQKAAKSRPLADIQHEEEPR
IITPDGELNRVLGGGLVPGSLVLIGGEPGIGKSTLMLQIALALKKLKVLYVSGEESEAQIKMRAERLADGQHPGCYILTE
TNTQNIFRQIDQVQPNIVVIDSIQTMHSTLVESGAGSVSQVRECTAELLKYAKETSVPVLLIGHITKDGSIAGPKILEHM
VDTVLQFEGDRHLSYRILRTIKNRFGSTSELGIYEMQGTGLRQVSNPSEILLSQRAESLSGMAIGATLEGNRPLLVEVQA
LVTPATYGTPQRSSTGFDAKRLQMLLAVLEKRAGLRLGQHDVFLNIAGGLRLDDPALDAAVCAAVVSSLNDLPIPGDVCL
AAEVGLSGEMRAVPRLDQRLAEAEKLGFREMYVSQFNGRNLAEQDRAGLRIQAVSRLDEVLNGLFG

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=448857 GKZ68_RS15360 WP_173116305.1 3479188..3480588(+) (radA) [Hymenobacter sp. BRD128]
ATGGCGAAGGCAAGAACGGTTTTTTTCTGCCAGAACTGCGGGGCGCAGTCGGCAAAATGGATAGGGCGCTGCCCCTCGTG
CGGCGAGTGGAACACCTATGTGGAGGAGGTGGTGCAGAAAGAAACCGCCGCCACGACCACCGGCCAGTGGAAACCCGCCA
GCACGGTGCCGGGCGGCAACCTTCAAAAAGCCGCCAAGTCGCGCCCGCTGGCCGACATTCAGCACGAAGAAGAGCCGCGC
ATCATTACCCCCGACGGCGAGCTCAACCGCGTGCTCGGCGGCGGCCTGGTGCCGGGCTCGCTAGTGCTCATCGGTGGCGA
GCCCGGCATCGGCAAAAGCACGCTGATGCTGCAAATCGCGCTAGCCCTTAAAAAGCTGAAAGTGCTGTACGTGAGCGGTG
AGGAAAGCGAAGCCCAGATAAAAATGCGCGCCGAGCGGCTGGCCGACGGCCAGCACCCCGGCTGCTACATCCTCACCGAA
ACCAACACCCAGAATATCTTCCGGCAGATAGACCAGGTGCAGCCCAACATCGTGGTCATCGACTCTATCCAGACCATGCA
CTCGACGCTGGTGGAGAGCGGCGCCGGCTCGGTGAGCCAGGTGCGCGAGTGCACCGCCGAGCTGCTCAAATATGCCAAGG
AAACCAGCGTGCCCGTGCTGCTCATCGGCCACATTACCAAAGATGGCAGCATCGCGGGGCCTAAAATATTGGAGCACATG
GTGGATACGGTGCTGCAATTTGAGGGCGACCGCCACCTGAGCTACCGCATTCTGCGCACCATCAAAAACCGCTTTGGCAG
CACCTCCGAGTTGGGTATTTACGAGATGCAGGGCACGGGCCTGCGCCAGGTGAGTAATCCTTCCGAAATCCTACTTTCGC
AGCGCGCCGAAAGCCTGAGCGGCATGGCCATCGGGGCCACCCTGGAAGGCAACCGCCCGCTGCTGGTGGAGGTGCAGGCC
CTCGTGACGCCCGCTACCTACGGCACCCCGCAGCGCAGCAGCACCGGCTTCGACGCCAAGCGCCTGCAAATGCTGCTGGC
CGTGCTCGAAAAGCGCGCCGGCCTGCGGCTAGGCCAGCACGACGTGTTTCTCAATATCGCGGGTGGCCTGCGCCTCGACG
ACCCGGCGCTCGACGCGGCCGTGTGCGCGGCCGTAGTCAGCAGCCTCAACGATTTACCCATTCCCGGCGATGTGTGCCTG
GCGGCCGAGGTGGGCCTCAGCGGCGAGATGCGCGCCGTGCCCCGCCTCGACCAGCGCCTGGCCGAGGCCGAGAAGCTGGG
CTTCCGGGAAATGTACGTGTCGCAATTCAATGGTCGCAACCTGGCCGAGCAGGACCGCGCCGGGCTGCGCATTCAGGCTG
TGAGCCGGCTCGATGAGGTGTTGAATGGGCTCTTTGGCTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(79-229)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(368-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7D3X8K0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

48.203

100

0.489
  radA Streptococcus pneumoniae Rx1

48.203

100

0.489
  radA Streptococcus pneumoniae D39

48.203

100

0.489
  radA Streptococcus pneumoniae TIGR4

48.203

100

0.489
  radA Bacillus subtilis subsp. subtilis str. 168

51.591

94.421

0.487
  radA Streptococcus mitis SK321

47.983

100

0.485
  radA Streptococcus mitis NCTC 12261

47.983

100

0.485