Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GKZ67_RS16210 Genome accession   NZ_CP053904
Coordinates   3483053..3484453 (+) Length   466 a.a.
NCBI ID   WP_173244321.1    Uniprot ID   -
Organism   Hymenobacter sp. BRD67     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3478053..3489453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKZ67_RS16195 (GKZ67_16200) - 3478205..3480358 (+) 2154 WP_173244312.1 sigma-54-dependent Fis family transcriptional regulator -
  GKZ67_RS16200 (GKZ67_16205) - 3480409..3481110 (+) 702 WP_173244315.1 hypothetical protein -
  GKZ67_RS16205 (GKZ67_16210) - 3481116..3482513 (-) 1398 WP_173244318.1 ImmA/IrrE family metallo-endopeptidase -
  GKZ67_RS16210 (GKZ67_16215) radA 3483053..3484453 (+) 1401 WP_173244321.1 DNA repair protein RadA Machinery gene
  GKZ67_RS16215 (GKZ67_16220) - 3484704..3486278 (+) 1575 WP_173244323.1 peroxiredoxin family protein -
  GKZ67_RS16220 (GKZ67_16225) - 3486357..3487378 (+) 1022 Protein_3409 SPASM domain-containing protein -
  GKZ67_RS16225 (GKZ67_16230) - 3487501..3487842 (-) 342 WP_173244326.1 hypothetical protein -
  GKZ67_RS16230 (GKZ67_16235) - 3487958..3488149 (-) 192 WP_217278606.1 FeoB-associated Cys-rich membrane protein -
  GKZ67_RS16235 (GKZ67_16240) - 3488230..3489048 (-) 819 WP_173244329.1 inositol monophosphatase family protein -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 50452.84 Da        Isoelectric Point: 6.3968

>NTDB_id=448851 GKZ67_RS16210 WP_173244321.1 3483053..3484453(+) (radA) [Hymenobacter sp. BRD67]
MAKARTVYFCQSCGAQSAKWIGRCPSCGEWNTYVEEVIQKETVATTTGQWKPASTVPGGNLNKAAKSRPLADIQHEEEPR
ILTPDGELNRVLGGGLVPGSIVLIGGEPGIGKSTLMLQIALMMKQLRILYVSGEESEAQIKMRAERLADGQHANCYILTE
TNTQNIFRQVDQVQPNLLVIDSIQTMHSTLVESGAGSVSQVRECTAEFLKYAKETGVPVLLIGHITKDGSIAGPKILEHM
VDTVLQFEGDRHLSYRILRTTKNRFGSTSELGIYEMQGTGLRQVSNPSEILLSQRAESLSGMAIGATLEGNRPLLVEVQA
LVTPATYGTPQRSSTGFDSKRLQMLLAVLEKRAGLRLGQHDVFLNIAGGLRLDDPALDAAVCAAVVSSLNDLPIPGDVCL
AAEVGLSGEMRAVPRLDQRLAEAEKLGFREMYVSQFNGKNLAAQDRAGLRIQAVSRLDEVLQGLFG

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=448851 GKZ67_RS16210 WP_173244321.1 3483053..3484453(+) (radA) [Hymenobacter sp. BRD67]
ATGGCGAAGGCAAGAACCGTTTATTTCTGTCAGAGCTGCGGGGCGCAGTCGGCCAAGTGGATAGGGCGCTGCCCTTCGTG
CGGCGAGTGGAACACCTACGTTGAAGAAGTTATTCAGAAGGAAACCGTGGCCACCACTACCGGCCAGTGGAAGCCTGCCA
GCACCGTGCCCGGCGGCAACCTCAACAAAGCAGCCAAGTCGCGCCCCTTGGCTGATATTCAGCACGAAGAAGAGCCGCGC
ATTCTCACGCCCGACGGCGAGCTGAACCGCGTGCTGGGTGGCGGTCTGGTACCGGGCTCTATTGTGCTCATCGGCGGCGA
GCCGGGCATTGGCAAGAGCACGCTCATGCTTCAGATTGCCCTGATGATGAAGCAGCTACGCATTCTGTACGTGAGCGGCG
AAGAAAGCGAGGCCCAGATAAAGATGCGGGCCGAGCGCCTGGCCGACGGCCAACACGCCAATTGCTACATATTAACTGAA
ACCAATACGCAGAATATTTTCCGGCAGGTAGACCAGGTGCAGCCCAACCTGCTCGTCATCGACTCTATCCAGACCATGCA
TTCGACGCTGGTAGAGAGTGGGGCGGGCTCGGTGAGCCAGGTGCGCGAGTGCACGGCCGAGTTTCTAAAATACGCCAAGG
AAACCGGCGTGCCGGTGCTGCTCATCGGGCACATTACCAAGGATGGCAGCATTGCGGGCCCCAAAATTCTGGAGCACATG
GTCGATACCGTGCTGCAGTTTGAGGGCGACCGGCATTTAAGCTACCGCATTCTGCGCACCACCAAAAACCGCTTTGGCAG
CACCTCGGAGCTAGGCATTTACGAGATGCAGGGCACCGGCCTGCGCCAGGTATCGAACCCGTCCGAGATTCTACTTTCGC
AGCGCGCCGAAAGCCTGAGCGGCATGGCTATCGGGGCTACGCTGGAAGGCAACCGCCCGCTACTGGTAGAAGTGCAGGCC
CTGGTAACGCCTGCCACCTACGGCACGCCCCAGCGTAGCAGTACGGGCTTCGACAGCAAGCGCCTGCAAATGCTACTGGC
TGTACTCGAAAAGCGCGCCGGCCTGCGCCTCGGCCAGCACGATGTGTTTCTGAATATCGCCGGCGGCCTGCGCCTCGACG
ACCCGGCGCTCGATGCGGCCGTGTGCGCCGCCGTAGTTTCCTCGCTCAATGACCTACCTATTCCGGGCGACGTATGCCTG
GCCGCCGAGGTTGGCCTCAGCGGGGAGATGCGCGCCGTGCCCCGCCTCGACCAGCGCCTGGCCGAAGCCGAGAAGCTGGG
CTTTCGCGAAATGTACGTGTCGCAGTTCAACGGCAAGAACCTGGCCGCCCAGGACCGCGCGGGTCTGCGCATCCAGGCGG
TAAGCCGGCTCGATGAAGTGCTGCAAGGCCTGTTTGGGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(368-463)

AAA domain (AAA_25)

(80-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

47.992

100

0.487
  radA Bacillus subtilis subsp. subtilis str. 168

48.188

100

0.485
  radA Streptococcus pneumoniae D39

47.569

100

0.483
  radA Streptococcus pneumoniae TIGR4

47.569

100

0.483
  radA Streptococcus pneumoniae R6

47.569

100

0.483
  radA Streptococcus pneumoniae Rx1

47.569

100

0.483
  radA Streptococcus mitis NCTC 12261

47.346

100

0.479