Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   STCNRZ1575_RS08160 Genome accession   NZ_CP065490
Coordinates   1569399..1573052 (-) Length   1217 a.a.
NCBI ID   WP_011681595.1    Uniprot ID   Q03IZ8
Organism   Streptococcus thermophilus strain CNRZ1575     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1564399..1578052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ1575_RS08140 (STCNRZ1575_08105) proB 1564749..1565552 (-) 804 WP_011681591.1 glutamate 5-kinase -
  STCNRZ1575_RS08145 (STCNRZ1575_08110) - 1565673..1567262 (-) 1590 WP_011681592.1 ABC transporter permease -
  STCNRZ1575_RS08150 (STCNRZ1575_08115) - 1567265..1567996 (-) 732 WP_011681593.1 ABC transporter ATP-binding protein -
  STCNRZ1575_RS08155 (STCNRZ1575_08120) - 1568271..1569005 (+) 735 Protein_1540 DUF554 domain-containing protein -
  STCNRZ1575_RS08160 (STCNRZ1575_08125) rexA 1569399..1573052 (-) 3654 WP_011681595.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  STCNRZ1575_RS08165 (STCNRZ1575_08130) rexB 1573042..1576362 (-) 3321 WP_011681596.1 ATP-dependent nuclease subunit B Machinery gene
  STCNRZ1575_RS08170 (STCNRZ1575_08135) - 1576853..1577504 (-) 652 Protein_1543 hypothetical protein -
  STCNRZ1575_RS08175 (STCNRZ1575_08140) - 1577554..1577987 (-) 434 Protein_1544 LytTR family DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 1217 a.a.        Molecular weight: 138310.49 Da        Isoelectric Point: 4.7750

>NTDB_id=448765 STCNRZ1575_RS08160 WP_011681595.1 1569399..1573052(-) (rexA) [Streptococcus thermophilus strain CNRZ1575]
MLTKAFLSPAEIEERIAQEAASDKDRKLTPEQIEAIYSNGTNILVSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFT
VKAAGELKERLEKRLTKHLGQAETDEERAFLSDQIAKIGTADIGTMDAFTQKLVNQYGYLLGVSPTFRIMTDLAEQTLMK
NEVYADLFNDYMQGKDAQLFQKLVRNFTGHSKTSKAFRDLVYDIYSFSQATADPEKWLRQNLLKGQIEAKPEQAKNELLD
SLKDGLLADFLAFLRDHLGIAQREFAKAKYLNNVSDAIILLEGSLINDQTDMEDLLKQLLTLSGGTGLTNMTRPKDEELK
AYKEAYNKTKNEFVAQLREVDTQLTVLEVLAKHNDDILPMLELLQSFVLDFSDQYLQAKIQENTFEFSDIAHFAIRILEE
NPEVAVSYRDRYHEVMVDEYQDNSHTQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNDKFQLFLENPDAGKLILL
KENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVAGSQKQKEPHPENETEVLIYNSDESSTSEDEEGPDQAISSGE
ISLVIKEIIKLHEQGVRFEDITLLAPNRNTYLDLMVSFEEHGIPLVPDEYKSSYLESLEVMIMLDTLRAINNPLNDYALV
ALLRSPMFNFNEDDLTRIAVQADKGQFYDKLLAAHTKSGLHPEVVMQGLDAKLTLFTETLADWRDYSKCHSIYDLIWKIY
NDRFYYDYVGGLPRAEQRQANLYALALRANAYEKTGFKGLSRFIGMIDKIIASGNDLEEVTDLVPKNAVSLMTIHKSKGL
EFKYVFVLQMNRKFIGHSKDGLSGKYIINREKGLGIKYLADLKDQINTNLPKLNVVLETLTFQENRREERRASISEEMRL
LYVAMTRAEKKLYLVGKGSKETLTQQYGTNVENNRLPVAIRDQIATYQDWIMALDTAFMRKDLKFTVRFVEAEELTPEAI
GQVEVQAAVDADDLSNNRQTEDIKRALTVLESVEKLNQLYAPAIDLPSVRTPSQLKTLYEPIMDTEGVDIMDKKEGVQPL
ETASTFELPDFGQKTKVTGAAVGSATHELMQRLILSDKVTLQDLTQALSRVSADDQVKARVQLEKLLGFFDTELGKLILA
NRGKLRREAPFAMLAEDPASKEDFVVRGIIDGYLLLEDRIVLFDYKTDHFTHPSELKTRYQGQMSLYAKALSQAYQMEKV
DKYLILLGGKDLEVVEV

Nucleotide


Download         Length: 3654 bp        

>NTDB_id=448765 STCNRZ1575_RS08160 WP_011681595.1 1569399..1573052(-) (rexA) [Streptococcus thermophilus strain CNRZ1575]
ATGTTGACTAAAGCTTTTTTAAGTCCAGCAGAGATTGAGGAACGTATTGCCCAAGAAGCAGCTTCTGACAAGGATCGCAA
GTTAACACCAGAACAGATTGAAGCTATTTACAGTAATGGTACTAATATTTTGGTATCTGCCTCAGCTGGTTCAGGGAAAA
CCTTTGTCATGGTTGAGCGTATCCTTGATATGATTGGACGTGGCGTTGGTATTGATCAACTCTTTATCTCAACCTTTACG
GTAAAAGCTGCAGGTGAGTTAAAGGAGCGTCTGGAAAAGCGGCTGACAAAGCATTTAGGACAGGCAGAGACGGATGAGGA
GCGGGCATTTCTTTCAGACCAGATTGCCAAGATTGGGACGGCTGATATTGGAACCATGGATGCCTTTACCCAGAAATTGG
TCAATCAGTATGGCTATCTCCTGGGTGTGTCACCTACTTTCCGTATCATGACAGACCTTGCTGAGCAGACGCTTATGAAA
AATGAGGTTTATGCTGATCTCTTCAATGATTATATGCAAGGAAAGGATGCCCAACTTTTTCAAAAATTGGTCCGTAATTT
CACTGGACATAGCAAAACTAGCAAGGCTTTTCGTGATTTAGTTTACGATATTTACAGCTTTTCTCAGGCTACTGCAGATC
CTGAAAAATGGCTACGTCAAAATCTCTTGAAAGGACAGATCGAGGCTAAGCCAGAACAGGCTAAAAATGAGCTTTTAGAC
AGTCTTAAAGATGGATTGTTGGCTGATTTCCTAGCTTTCTTAAGAGACCATTTAGGTATAGCTCAGCGTGAATTTGCCAA
GGCCAAGTATCTGAATAATGTGTCAGATGCCATTATCCTTCTTGAGGGCTCCTTGATTAATGACCAAACTGATATGGAGG
ACCTCCTCAAACAACTATTGACTCTGTCAGGAGGTACTGGTTTGACCAATATGACCCGTCCTAAAGACGAGGAACTCAAG
GCCTACAAGGAAGCATACAACAAGACCAAAAATGAGTTTGTGGCTCAGTTGCGAGAGGTCGATACTCAGCTCACCGTTCT
GGAGGTTTTGGCCAAGCATAATGATGATATCCTACCTATGTTGGAGCTACTTCAGTCCTTTGTACTTGATTTTTCGGATC
AGTATTTACAGGCAAAGATTCAGGAAAATACCTTTGAATTCTCGGATATTGCCCACTTTGCTATCCGTATTTTGGAAGAA
AATCCAGAGGTGGCAGTCAGCTACCGGGACCGTTACCATGAAGTTATGGTGGATGAGTATCAGGACAATAGCCATACTCA
AGAACGAATGTTGGAACTTCTATCTAACGGCCATAACCGATTCATGGTGGGAGATATCAAGCAGTCCATTTATCGTTTCC
GTCAGGCAGACCCTCAGATTTTTAATGATAAGTTTCAGCTTTTCCTTGAAAATCCTGATGCAGGTAAGCTGATTCTCCTT
AAGGAGAACTTTCGTAGTCAATCTGAAGTCCTTGATGCGACAAATGGTGTTTTTAGCCACCTCATGGATCAGGAAATCGG
GGACATCCTATATGACAAGACTCATATGTTGGTAGCAGGTAGTCAGAAGCAAAAAGAGCCCCATCCTGAAAATGAAACTG
AGGTTCTGATTTATAATAGTGATGAATCTAGTACGAGTGAGGATGAAGAAGGTCCTGATCAAGCTATCAGCAGCGGTGAG
ATTTCCTTGGTTATCAAAGAAATTATCAAACTTCATGAGCAGGGTGTACGTTTTGAGGACATCACCCTCCTAGCACCGAA
CCGTAACACCTATCTGGACTTGATGGTAAGTTTCGAGGAACACGGGATTCCCTTGGTTCCTGACGAGTATAAATCAAGCT
ACCTAGAGTCACTAGAAGTTATGATTATGTTGGACACCCTTCGTGCTATCAATAATCCTCTTAACGATTATGCTCTCGTT
GCTCTCCTTCGTTCACCTATGTTTAACTTCAACGAGGATGACCTGACTCGTATCGCAGTTCAGGCTGACAAAGGCCAATT
CTATGATAAGCTTCTTGCAGCTCATACCAAATCAGGTCTTCATCCGGAAGTTGTGATGCAAGGACTTGATGCCAAGTTGA
CTCTCTTCACAGAGACTCTGGCAGATTGGCGTGACTACAGTAAGTGTCATTCGATTTATGACCTCATTTGGAAGATTTAC
AACGACCGTTTCTATTATGATTACGTCGGAGGTCTTCCACGAGCTGAGCAACGCCAGGCCAATCTTTATGCCCTTGCCTT
GCGTGCTAATGCTTATGAAAAGACAGGATTTAAGGGGCTTTCTCGTTTTATTGGCATGATTGATAAGATTATTGCTAGCG
GTAACGACCTAGAGGAAGTGACAGATTTGGTTCCCAAAAATGCCGTTAGCCTCATGACCATTCACAAGTCCAAGGGGCTA
GAGTTCAAGTATGTCTTTGTCCTGCAGATGAATCGTAAGTTCATTGGTCACAGCAAGGATGGCCTGAGCGGTAAGTATAT
TATCAATCGTGAAAAAGGGCTTGGTATTAAGTATCTAGCTGACCTCAAAGACCAGATAAACACCAATTTGCCTAAGTTAA
ATGTTGTTCTTGAGACCTTGACCTTCCAGGAAAATCGTAGGGAAGAGCGCAGGGCAAGTATTTCAGAAGAGATGCGTCTA
CTCTATGTGGCAATGACACGTGCAGAGAAGAAACTCTACCTAGTTGGTAAGGGAAGTAAGGAAACCTTAACCCAGCAGTA
TGGCACTAATGTCGAAAATAATCGCCTACCAGTGGCTATACGTGACCAGATTGCTACTTATCAGGATTGGATTATGGCAC
TTGATACTGCTTTTATGAGAAAGGACCTCAAGTTTACTGTTCGCTTTGTTGAGGCTGAGGAGTTGACGCCAGAGGCTATT
GGTCAGGTTGAAGTTCAAGCAGCAGTGGATGCTGATGATCTATCTAACAATCGTCAGACGGAAGATATTAAGCGTGCTCT
AACTGTCTTAGAAAGTGTTGAAAAACTCAACCAGCTTTATGCACCAGCGATTGACCTACCTTCTGTGCGTACCCCAAGCC
AGCTCAAGACCCTTTACGAACCAATTATGGATACAGAGGGCGTAGATATCATGGATAAGAAAGAGGGAGTGCAACCTCTT
GAGACGGCTAGCACCTTTGAGCTTCCAGACTTTGGGCAAAAAACTAAGGTCACTGGAGCTGCAGTTGGTTCAGCCACCCA
TGAACTCATGCAACGCTTGATTCTTTCTGACAAGGTGACCCTCCAAGATTTGACACAGGCGTTGAGTCGGGTATCGGCAG
ATGATCAAGTTAAGGCGCGTGTGCAGTTAGAAAAGCTACTAGGCTTCTTTGACACCGAACTTGGGAAGCTCATTCTAGCT
AACCGTGGTAAGTTGCGTCGTGAAGCACCATTTGCTATGTTGGCAGAAGATCCCGCTAGTAAAGAAGACTTTGTCGTCCG
TGGTATCATCGATGGCTACCTTCTTCTTGAAGACCGTATTGTCCTCTTTGACTACAAGACCGACCACTTCACTCATCCTA
GTGAGCTTAAGACACGCTACCAAGGGCAAATGAGCCTCTATGCTAAAGCGCTTAGCCAAGCCTATCAAATGGAAAAGGTC
GACAAATATCTTATCCTCTTGGGTGGAAAGGACTTAGAAGTTGTAGAAGTATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(478-894)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(28-464)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1059-1198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q03IZ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

50.367

100

0.507