Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HQ616_RS08580 Genome accession   NZ_CP053891
Coordinates   1686601..1687092 (-) Length   163 a.a.
NCBI ID   WP_000609586.1    Uniprot ID   A0AAD2WUV1
Organism   Streptococcus agalactiae strain GBS20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1681601..1692092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ616_RS08565 (HQ616_08515) - 1684507..1685178 (-) 672 WP_000174844.1 DUF1129 domain-containing protein -
  HQ616_RS08570 (HQ616_08520) - 1685203..1686147 (-) 945 WP_000812124.1 magnesium transporter CorA family protein -
  HQ616_RS08575 (HQ616_08525) rpsR 1686317..1686556 (-) 240 WP_000068665.1 30S ribosomal protein S18 -
  HQ616_RS08580 (HQ616_08530) ssb 1686601..1687092 (-) 492 WP_000609586.1 single-stranded DNA-binding protein Machinery gene
  HQ616_RS08585 (HQ616_08535) rpsF 1687104..1687391 (-) 288 WP_001151773.1 30S ribosomal protein S6 -
  HQ616_RS08590 (HQ616_08540) mutY 1688454..1689608 (+) 1155 WP_016480119.1 A/G-specific adenine glycosylase -
  HQ616_RS08595 (HQ616_08545) - 1689785..1690378 (+) 594 WP_000402392.1 helix-turn-helix domain-containing protein -
  HQ616_RS08600 (HQ616_08550) trxA 1690424..1690756 (-) 333 WP_001932060.1 thioredoxin -
  HQ616_RS08605 (HQ616_08555) - 1690819..1691319 (-) 501 WP_000446806.1 phosphatase PAP2 family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18155.77 Da        Isoelectric Point: 4.9119

>NTDB_id=448765 HQ616_RS08580 WP_000609586.1 1686601..1687092(-) (ssb) [Streptococcus agalactiae strain GBS20]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSSNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=448765 HQ616_RS08580 WP_000609586.1 1686601..1687092(-) (ssb) [Streptococcus agalactiae strain GBS20]
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACACGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCATCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACGCCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.465

100

0.638
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.286

100

0.626
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.963

66.871

0.374
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368