Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   GGS_RS01035 Genome accession   NC_018712
Coordinates   191541..192830 (-) Length   429 a.a.
NCBI ID   WP_003056985.1    Uniprot ID   A0ABU0A931
Organism   Streptococcus dysgalactiae subsp. equisimilis RE378     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 186541..197830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GGS_RS11070 - 187409..187561 (-) 153 WP_231117731.1 hypothetical protein -
  GGS_RS01010 (GGS_0194) - 187781..189358 (+) 1578 WP_003059548.1 ABC transporter ATP-binding protein -
  GGS_RS11330 - 189378..189718 (+) 341 Protein_171 hypothetical protein -
  GGS_RS01020 (GGS_0195) - 189823..190677 (+) 855 WP_012766489.1 aminoglycoside 6-adenylyltransferase -
  GGS_RS01025 (GGS_0196) - 190700..191050 (+) 351 Protein_173 histidine phosphatase family protein -
  GGS_RS01035 (GGS_0198) rarA 191541..192830 (-) 1290 WP_003056985.1 replication-associated recombination protein A Machinery gene
  GGS_RS01040 (GGS_0199) - 192863..193429 (-) 567 WP_003056988.1 aminodeoxychorismate/anthranilate synthase component II -
  GGS_RS01045 (GGS_0200) pabB 193462..195219 (-) 1758 WP_042357818.1 aminodeoxychorismate synthase component I -
  GGS_RS01050 (GGS_0201) - 195420..195890 (+) 471 WP_011285734.1 DUF3013 family protein -
  GGS_RS01055 (GGS_0202) prmA 195961..196914 (+) 954 WP_015016591.1 50S ribosomal protein L11 methyltransferase -
  GGS_RS01060 (GGS_0203) - 196914..197672 (+) 759 WP_003061170.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -

Sequence

Protein


Download         Length: 429 a.a.        Molecular weight: 47270.04 Da        Isoelectric Point: 7.3658

>NTDB_id=44873 GGS_RS01035 WP_003056985.1 191541..192830(-) (rarA) [Streptococcus dysgalactiae subsp. equisimilis RE378]
MPDHLALRMRPKTISEVIGQEHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGTIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKRALR
TAITDKERGFAFDVMLDDNALDFIATATNGDLRSAYHSLDLAVMSTKPDSDGKRHITLDTVENSLQRSYITMDKDGDGHY
DVLSALQKAIRGSDVNASLHYAARLVEAGDLPSLARRLIVIAYEDIGLANPDAQVHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYLAMDAALSDLRTSGNLPIPRHLRDGHYAGSKELGNAKDYLYPHAYPKKWVKQQYLPDKLIGKQYFSP
NETGKYERALGANKERIDKLSSHSTGIPK

Nucleotide


Download         Length: 1290 bp        

>NTDB_id=44873 GGS_RS01035 WP_003056985.1 191541..192830(-) (rarA) [Streptococcus dysgalactiae subsp. equisimilis RE378]
ATGCCCGATCATTTAGCGCTCCGCATGCGCCCCAAAACCATTTCAGAGGTCATCGGACAAGAACATCTTGTTGGAGAAGG
TAAAATCATCCGTCGCATGGTGGAAGCCAATATGCTATCGTCCATGATTCTCTATGGTCCTCCAGGAATCGGTAAAACTT
CCATTGCTAGCGCTATTGCAGGTACCACCAAGTATGCCTTTCGGACCTTTAATGCCACCGTTGATAGCAAAAAACGTCTC
CAAGAAATTGCTGAGGAGGCCAAATTTTCAGGAGGATTGGTATTGCTACTAGACGAGATTCATCGGCTAGACAAAACCAA
ACAAGACTTCCTGCTCCCCTTACTGGAAAATGGTACCATTATCATGATTGGCGCAACCACTGAGAATCCCTTCTTTTCAG
TGACACCAGCTATCAGAAGCAGGGTCCAGATTTTTGAACTGGAACCTCTCTCCAACGAGGATATCAAGCGTGCCCTTCGA
ACTGCCATTACCGATAAAGAAAGAGGCTTTGCCTTTGACGTGATGCTTGACGATAATGCTCTTGATTTTATCGCAACAGC
CACCAATGGCGATTTACGCTCAGCCTATCACTCCTTGGATCTAGCAGTCATGTCTACAAAGCCAGATAGCGATGGGAAGC
GACACATCACCTTAGACACTGTTGAAAATTCCTTGCAGCGCAGCTATATTACCATGGATAAAGATGGCGACGGGCATTAT
GATGTCCTATCTGCCCTCCAAAAAGCTATTCGTGGTTCCGATGTCAATGCCAGTCTTCACTATGCGGCACGATTAGTGGA
AGCAGGCGATTTACCAAGCCTAGCTAGGCGGTTGATTGTGATTGCTTATGAAGATATTGGTTTGGCTAATCCTGACGCCC
AAGTCCATACCGTTACCGCACTTGATGCCGCTCAGAAAATCGGCTTTCCAGAAGCACGTATTCTAATTGCTAACGTGGTC
ATTGATTTGGCCTTATCCCCAAAATCCAACTCAGCTTATCTGGCCATGGATGCTGCCTTAAGCGATTTGAGAACATCAGG
AAACCTTCCTATTCCAAGGCATTTGAGAGATGGGCATTATGCTGGCAGTAAAGAACTGGGGAATGCCAAAGATTACCTTT
ACCCCCACGCTTACCCTAAAAAATGGGTCAAACAACAGTACCTGCCAGATAAATTAATCGGTAAACAGTATTTTTCCCCA
AACGAAACAGGAAAATATGAACGCGCCCTGGGTGCCAACAAAGAGCGTATTGACAAGCTTTCTAGTCACTCAACCGGTAT
CCCAAAGTAG

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(174-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

60.671

97.203

0.59

Multiple sequence alignment