Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   STCNRZ1575_RS01330 Genome accession   NZ_CP065490
Coordinates   237103..237699 (-) Length   198 a.a.
NCBI ID   WP_024009722.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CNRZ1575     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 232103..242699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ1575_RS01315 (STCNRZ1575_01330) - 232784..233224 (+) 441 WP_011225416.1 DUF805 domain-containing protein -
  STCNRZ1575_RS01320 (STCNRZ1575_01335) pepC 233326..234663 (+) 1338 WP_002949403.1 aminopeptidase C -
  STCNRZ1575_RS01325 (STCNRZ1575_01340) pbp1a 234773..237103 (-) 2331 WP_260214181.1 penicillin-binding protein PBP1A -
  STCNRZ1575_RS01330 (STCNRZ1575_01345) recU 237103..237699 (-) 597 WP_024009722.1 Holliday junction resolvase RecU Machinery gene
  STCNRZ1575_RS01335 (STCNRZ1575_01350) - 237776..238291 (+) 516 WP_260214182.1 DUF1273 domain-containing protein -
  STCNRZ1575_RS01340 (STCNRZ1575_01355) gpsB 238400..238732 (+) 333 WP_014607932.1 cell division regulator GpsB -
  STCNRZ1575_RS01350 (STCNRZ1575_01365) - 239266..240432 (+) 1167 WP_232992620.1 class I SAM-dependent RNA methyltransferase -
  STCNRZ1575_RS01355 (STCNRZ1575_01370) - 240435..242297 (+) 1863 WP_260214183.1 cell division site-positioning protein MapZ family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22783.32 Da        Isoelectric Point: 10.1109

>NTDB_id=448700 STCNRZ1575_RS01330 WP_024009722.1 237103..237699(-) (recU) [Streptococcus thermophilus strain CNRZ1575]
MVNYPHQISRKIAQVSTKKSNRVDFANRGMNFESAINATNNYYLSRGLAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVYKGYYIDFEAKETRQKTSMPMKNFHPHQIKHMSQVINQDGICFVLLHFSTLKETYLLPAKDLIAFYQIDKG
TKSMPLDYIKKRGYAIAESAYPQVPYLEIIEKLLGGNT

Nucleotide


Download         Length: 597 bp        

>NTDB_id=448700 STCNRZ1575_RS01330 WP_024009722.1 237103..237699(-) (recU) [Streptococcus thermophilus strain CNRZ1575]
ATGGTAAACTATCCCCATCAGATATCTCGTAAGATAGCACAAGTAAGTACTAAAAAATCTAATAGAGTTGACTTTGCCAA
TCGGGGGATGAACTTTGAATCTGCTATCAATGCGACTAATAATTACTATTTGTCGCGTGGCTTAGCCGTTATTCATAAGA
AACCTACACCTGTTCAGATCGTCAAAGTCGATTATCCAAAACGCTCACGAGCAAAGATTGTAGAAGCTTACTTTAGGCAA
GCCTCAACTACTGACTACTCTGGCGTTTACAAAGGATACTATATTGATTTTGAAGCCAAAGAGACACGGCAAAAGACATC
TATGCCTATGAAAAACTTTCATCCGCATCAAATTAAGCACATGTCTCAGGTCATCAATCAAGATGGAATCTGCTTCGTGC
TACTTCACTTTTCAACGCTTAAGGAAACCTACCTTCTGCCTGCCAAAGACTTAATCGCTTTTTATCAAATTGATAAGGGG
ACAAAATCAATGCCTCTTGATTATATCAAAAAAAGAGGTTATGCAATCGCAGAGTCAGCTTATCCTCAAGTTCCTTATTT
AGAGATCATTGAAAAATTATTAGGTGGTAACACATAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

50.505

100

0.505