Detailed information    

insolico Bioinformatically predicted

Overview

Name   hdrM   Type   Regulator
Locus tag   STAVA1121_RS06435 Genome accession   NZ_CP065488
Coordinates   1199576..1200241 (-) Length   221 a.a.
NCBI ID   WP_164178181.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain AVA1121     
Function   repress competence development; negative regulate HdrR activity (predicted from homology)   
Competence regulation

Genomic Context

Location: 1194576..1205241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAVA1121_RS06405 (STAVA1121_06320) - 1195925..1196800 (-) 876 WP_347131127.1 helix-turn-helix domain-containing protein -
  STAVA1121_RS06410 (STAVA1121_06325) - 1196929..1197333 (-) 405 WP_070655990.1 NUDIX hydrolase -
  STAVA1121_RS06415 (STAVA1121_06330) - 1197333..1197617 (-) 285 WP_011681341.1 hypothetical protein -
  STAVA1121_RS06420 (STAVA1121_06335) - 1197757..1198416 (-) 660 WP_011681342.1 DUF6572 domain-containing protein -
  STAVA1121_RS06425 (STAVA1121_06340) - 1198491..1198691 (-) 201 Protein_1211 ATP-binding cassette domain-containing protein -
  STAVA1121_RS06430 (STAVA1121_06345) - 1198762..1199439 (-) 678 WP_164178180.1 hypothetical protein -
  STAVA1121_RS06435 (STAVA1121_06350) hdrM 1199576..1200241 (-) 666 WP_164178181.1 hypothetical protein Regulator
  STAVA1121_RS06440 (STAVA1121_06355) - 1200254..1200748 (-) 495 WP_084829714.1 YkgJ family cysteine cluster protein -
  STAVA1121_RS06445 (STAVA1121_06360) - 1200833..1202832 (-) 2000 Protein_1215 ABC transporter permease -
  STAVA1121_RS06450 (STAVA1121_06365) - 1202834..1203591 (-) 758 Protein_1216 ABC transporter ATP-binding protein -
  STAVA1121_RS06455 (STAVA1121_06370) - 1203736..1204707 (-) 972 WP_041827155.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25115.19 Da        Isoelectric Point: 9.7598

>NTDB_id=448539 STAVA1121_RS06435 WP_164178181.1 1199576..1200241(-) (hdrM) [Streptococcus thermophilus strain AVA1121]
MKRFNSGVITLLIIAAYFIATAFIPDLYLAFNYKLILALLFVLLSWQSKGKFLFFLGMAFLSTYIHDLFRLDYSEWTLFV
GILILGIAVDRLSKPSYKKKFSYKVSKEHEREIFAKTLFSESVQVVTSQNLETVYANADFGRLTLDLRQAQFMTDRPQIV
VQANFSQVIIRVPKDWQVDTHGLHTSLSGVKGYDSLGERELSSTTVSLTGSVSFGQVTIKH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=448539 STAVA1121_RS06435 WP_164178181.1 1199576..1200241(-) (hdrM) [Streptococcus thermophilus strain AVA1121]
ATGAAACGCTTTAATTCAGGTGTTATTACCTTACTTATCATTGCAGCCTATTTTATCGCAACAGCTTTTATTCCAGATTT
GTATTTGGCTTTTAATTATAAGTTGATTTTAGCCTTGCTTTTTGTGCTTTTGAGCTGGCAATCTAAGGGAAAATTTCTCT
TTTTCTTGGGGATGGCCTTTCTATCAACCTACATACATGACCTTTTTCGCTTGGACTATTCGGAATGGACTCTCTTTGTA
GGGATTCTTATCTTGGGGATTGCAGTGGACCGTTTGAGCAAGCCAAGTTATAAGAAAAAATTCTCTTACAAGGTGTCTAA
AGAACATGAGCGAGAAATTTTTGCTAAGACTCTTTTTTCAGAGTCTGTGCAAGTGGTGACTTCTCAGAATCTTGAAACTG
TCTATGCCAATGCTGATTTTGGGCGTTTGACCTTGGATTTGCGTCAGGCTCAGTTTATGACGGACCGACCTCAGATTGTG
GTTCAGGCAAATTTTTCTCAGGTTATCATTCGAGTGCCCAAGGATTGGCAAGTGGATACACACGGGCTTCATACAAGCCT
ATCAGGAGTGAAAGGTTATGATAGTCTAGGAGAGCGAGAGTTATCAAGCACTACAGTTTCTCTAACAGGATCTGTATCCT
TTGGACAAGTAACTATCAAACATTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hdrM Streptococcus mutans UA159

37.963

97.738

0.371