Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   HQ398_RS16020 Genome accession   NZ_CP053882
Coordinates   3436261..3437700 (-) Length   479 a.a.
NCBI ID   WP_041210124.1    Uniprot ID   -
Organism   Aeromonas jandaei strain 3036     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3431261..3442700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ398_RS15990 (HQ398_15965) - 3431536..3432276 (+) 741 WP_215806043.1 KDGP aldolase family protein -
  HQ398_RS15995 (HQ398_15970) - 3432384..3434288 (+) 1905 WP_215806045.1 PTS sugar transporter subunit IIA -
  HQ398_RS16000 (HQ398_15975) npr 3434298..3434570 (-) 273 WP_033115454.1 PTS phosphocarrier protein NPr -
  HQ398_RS16005 (HQ398_15980) rapZ 3434591..3435457 (-) 867 WP_041210126.1 RNase adapter RapZ -
  HQ398_RS16010 (HQ398_15985) ptsN 3435503..3435949 (-) 447 WP_042030121.1 PTS IIA-like nitrogen regulatory protein PtsN -
  HQ398_RS16015 (HQ398_15990) hpf 3435952..3436239 (-) 288 WP_005336323.1 ribosome hibernation promoting factor -
  HQ398_RS16020 (HQ398_15995) rpoN/rpoN1 3436261..3437700 (-) 1440 WP_041210124.1 RNA polymerase factor sigma-54 Machinery gene
  HQ398_RS16025 (HQ398_16000) lptB 3437764..3438489 (-) 726 WP_033115458.1 LPS export ABC transporter ATP-binding protein -
  HQ398_RS16030 (HQ398_16005) lptA 3438493..3439020 (-) 528 WP_041210123.1 lipopolysaccharide transport periplasmic protein LptA -
  HQ398_RS16035 (HQ398_16010) lptC 3439007..3439567 (-) 561 WP_042030123.1 LPS export ABC transporter periplasmic protein LptC -
  HQ398_RS16040 (HQ398_16015) kdsC 3439564..3440118 (-) 555 WP_124241495.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  HQ398_RS16045 (HQ398_16020) - 3440118..3441113 (-) 996 WP_042030126.1 KpsF/GutQ family sugar-phosphate isomerase -
  HQ398_RS16050 (HQ398_16025) mlaF 3441321..3442121 (+) 801 WP_042030127.1 phospholipid ABC transporter ATP-binding protein MlaF -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53872.80 Da        Isoelectric Point: 4.3493

>NTDB_id=448391 HQ398_RS16020 WP_041210124.1 3436261..3437700(-) (rpoN/rpoN1) [Aeromonas jandaei strain 3036]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSSLELQQEIQQALESNPLLEQEESEVQETAPQEAVDASQLDSSDAMAQEQMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVALED
IQTAVSSDEVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLEQYAPETPWLNEAKEVILEHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQLLEPRPGNGIIQSDSQYVIPDVSVVKRQNRWVVELNPDSAPRIRVNETYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLFIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=448391 HQ398_RS16020 WP_041210124.1 3436261..3437700(-) (rpoN/rpoN1) [Aeromonas jandaei strain 3036]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCTCTCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGAAAGCAATCCTCTGCTGGAGCAGGAAGAGAGCGAAG
TGCAGGAGACTGCCCCGCAAGAGGCCGTCGATGCCAGCCAGCTCGACTCCAGCGATGCCATGGCTCAGGAGCAGATGCCG
GACGAGCTGCCGGTAGATACCACCTGGGATGAGGTTTACTCCGCCGGTACCGCCCAGAGTGCAGGCCCGATCCACGACGG
TGAAGACAGCGTCTATCAGGGCGAGACCACCGAAAACCTGCAGGACTATCTGTTGTGGCAGATGCGGCTCACGCCGTTTA
GCGATGTCGATGCCGCCATCGCGCTCGCCATCATCGATGCCATCGACGAATCCGGTTATCTGACCGTAGCGCTGGAGGAT
ATCCAGACCGCCGTCAGCAGTGACGAGGTAGAGGTCGAGCTCGACGAGGTGGAGGCTGTCCTCAAGCGGGTGCAGCATTT
TGACCCGGTCGGTATCGCCGCCCGTTCGGTGCAGGAGTGCCTGCTTATCCAGCTGGAGCAGTATGCCCCCGAGACCCCCT
GGCTCAACGAAGCCAAAGAGGTGATCCTCGAGCACATGGATCTTCTCGGCAACCGCGATTATCGTACTCTGGCCCGCAAA
ACCCGCCTCAAGGAGAGCGACCTCAAGGAGGTGCTGGATCTGATCCAGCTGCTGGAGCCGCGCCCCGGCAATGGCATTAT
CCAGAGCGACTCCCAGTATGTGATCCCCGATGTCTCTGTGGTAAAGCGCCAGAACCGCTGGGTGGTGGAGCTCAACCCCG
ATTCCGCCCCGCGCATCCGGGTCAACGAGACCTATGCCGCCATGGCCCGCAACGCCCGCAGCAGCACGGATACCCAATTC
ATCCGCTCCCACCTGCAGGAGGCCAAGTGGTTCATCAAGAGCCTTGAGAGCCGCAACGATACCCTGCTGAAAGTAGCCAG
CTGTATTGTCGAGCAGCAGCAGGGCTTTTTCGAGTATGGTGAAGAGGCGATGAAGCCGATGGTGCTCAACGACATCGCCG
AAGCGGTGGAGATGCATGAGTCGACCATCTCTCGGGTGACGACTCAGAAATACATGCATACCCCCCGTGGTATCTTCGAA
TTGAAGTTTTTTTTCTCCAGCCATGTGAACACCGAAGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
AAAGCTGGTGACGGCAGAGAATCCCGCCAAACCGTTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCTAGACGCACGATCGCTAAGTATCGCGAATCCTTGTTTATCCCACCTTCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.205

100

0.482