Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   STR1_RS08750 Genome accession   NZ_CP065486
Coordinates   1707277..1707594 (-) Length   105 a.a.
NCBI ID   WP_095559464.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain R1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1702277..1712594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STR1_RS08715 (STR1_08760) - 1702636..1703298 (-) 663 WP_023909970.1 type II CAAX endopeptidase family protein -
  STR1_RS08720 (STR1_08765) - 1703395..1703838 (-) 444 WP_011681680.1 hypothetical protein -
  STR1_RS08725 - 1703912..1704250 (-) 339 WP_224103197.1 CPBP family intramembrane glutamic endopeptidase -
  STR1_RS08730 - 1704294..1704569 (-) 276 WP_011681681.1 hypothetical protein -
  STR1_RS08735 (STR1_08775) - 1704581..1704778 (-) 198 WP_011681682.1 helix-turn-helix transcriptional regulator -
  STR1_RS08740 (STR1_08780) - 1705027..1706220 (-) 1194 WP_014608740.1 acetate kinase -
  STR1_RS08745 (STR1_08785) comGH 1706276..1707232 (-) 957 WP_095559463.1 class I SAM-dependent methyltransferase Machinery gene
  STR1_RS08750 (STR1_08790) comGG 1707277..1707594 (-) 318 WP_095559464.1 competence type IV pilus minor pilin ComGG Machinery gene
  STR1_RS08755 (STR1_08795) comGF 1707572..1708009 (-) 438 WP_082309153.1 competence type IV pilus minor pilin ComGF Machinery gene
  STR1_RS08760 (STR1_08800) comGE 1707993..1708286 (-) 294 WP_082309154.1 competence type IV pilus minor pilin ComGE Machinery gene
  STR1_RS08765 (STR1_08805) comGD 1708258..1708686 (-) 429 WP_253269448.1 competence type IV pilus minor pilin ComGD Machinery gene
  STR1_RS08770 (STR1_08810) comGC 1708646..1708972 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  STR1_RS08775 (STR1_08815) comGB 1708969..1710069 (-) 1101 WP_120764773.1 competence type IV pilus assembly protein ComGB Machinery gene
  STR1_RS08780 (STR1_08820) comGA 1709951..1710892 (-) 942 WP_084829888.1 competence type IV pilus ATPase ComGA Machinery gene
  STR1_RS08785 (STR1_08825) - 1710973..1711335 (-) 363 WP_011226630.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11796.92 Da        Isoelectric Point: 10.7627

>NTDB_id=448362 STR1_RS08750 WP_095559464.1 1707277..1707594(-) (comGG) [Streptococcus thermophilus strain R1]
MLLKKQVRGGVLLYALFMAGIFTLLLQVYLERVVASSRQNQAQIVASQSRLMAEMTMALVDKEAGSFSFSQGTTTYEVKG
KQVIVRVASKGQIKTYRYVKKQDQK

Nucleotide


Download         Length: 318 bp        

>NTDB_id=448362 STR1_RS08750 WP_095559464.1 1707277..1707594(-) (comGG) [Streptococcus thermophilus strain R1]
ATGCTTTTGAAAAAACAGGTTAGGGGAGGCGTTCTTCTCTACGCTCTTTTTATGGCTGGCATTTTTACACTCCTTCTTCA
GGTTTATCTGGAACGGGTGGTAGCTAGCTCTAGACAAAACCAAGCGCAAATAGTGGCCAGTCAAAGCCGTCTCATGGCAG
AGATGACTATGGCCTTGGTGGATAAGGAAGCAGGTTCTTTTAGTTTTTCTCAGGGGACTACGACTTACGAGGTTAAGGGT
AAGCAAGTGATTGTCAGAGTTGCCAGTAAAGGCCAAATCAAGACCTATCGTTATGTGAAGAAACAAGATCAGAAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Streptococcus mutans UA140

44.444

94.286

0.419
  comGG Streptococcus mutans UA159

44.444

94.286

0.419