Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   STR1_RS08065 Genome accession   NZ_CP065486
Coordinates   1577741..1581061 (-) Length   1106 a.a.
NCBI ID   WP_095559443.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain R1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1572741..1586061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STR1_RS08055 (STR1_08100) - 1572970..1573704 (+) 735 Protein_1546 DUF554 domain-containing protein -
  STR1_RS08060 (STR1_08105) rexA 1574098..1577751 (-) 3654 WP_011681595.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  STR1_RS08065 (STR1_08110) rexB 1577741..1581061 (-) 3321 WP_095559443.1 ATP-dependent nuclease subunit B Machinery gene
  STR1_RS08070 (STR1_08115) - 1581552..1582247 (-) 696 WP_011681597.1 hypothetical protein -
  STR1_RS08075 (STR1_08120) - 1582252..1582698 (-) 447 WP_011681598.1 LytTR family DNA-binding domain-containing protein -
  STR1_RS08080 (STR1_08125) - 1582916..1583536 (-) 621 WP_011226524.1 hypothetical protein -
  STR1_RS08085 (STR1_08130) - 1583998..1585021 (-) 1024 Protein_1552 DUF6574 domain-containing protein -

Sequence

Protein


Download         Length: 1106 a.a.        Molecular weight: 126861.62 Da        Isoelectric Point: 5.0962

>NTDB_id=448351 STR1_RS08065 WP_095559443.1 1577741..1581061(-) (rexB) [Streptococcus thermophilus strain R1]
MKLLYTDMSQDLTEILTEQASSYAQKGKRVFYIAPSALSFEKERKVLEYLPQSASFDITVTRFTQMARYFILNTSNPKTQ
LDDTGLAMIFYKVLLHMGDDELKVYGRLRKDSNFINQLVDLYKELQQANMTVLDLQHLDQVEKQEDLVRIFSAAQDLLLA
GDFDNQSKLSAFFKEITSGHLDEALSNTVLVIDGFTRFSAEEEALVALLNDKCHQIVVGTYTSRKAYKANFVYGNVYQAS
VDFLRTLAQTYKVIPDYVTTDKEGNRSFARISRLLESRHDFSTVDETVTEQDKHALKVWEVVNQKEEVAQVAKSIRQLLA
DGKRYKDILVLLGDEESYKLHVGQIFRKFDIPYYFGKEESMSSHPLVEFVDSLERIKRYNYRAEDLLNLVKSGLYGGFAQ
EDLDLFEYYVNFADIKGRHKFLSDFTANSRDKYNLDQINALRSQLIEPLDKFLNSRKQKGSSLLKKLVVFLEAVQLPSQM
FELSTKASEAEKEQNEQVWKAFTHILEQVETIFGDESLSVDDFLSILRSGMLACDYRTVPATVDVVNVKKYDLIQPHSAP
YVFALGMTQSHFPKVGQNKSLLSDEERSRINEATDEHRRLDIVTQINSKRGHFVAMSLFNAASEQLVLSQPQIINESQDD
MSVYLKELLDLGIPLVEKGRNRFEAKGDQIGNYRDLLSTVIALNSSHLDLDLDKETQTFWSVAVRYLRKRLDKDQVLIPK
VIDDVTTTKVDDQVMQLVFPEEEPLKLSATALTTFYNNQYLYFLRYVLELEELESIHPDARHHGTYLHRVFERVMGDSSS
ESFDDKLEKAIAQTNQDQPFEILYTEDQESRFSRQILEDIARSTASVLRDNAAVKVEREEVKFDLLLANSIKITGIIDRV
DRLTDGALGVVDYKTGKNVFDIQKFYNGLSPQLVTYLEALRQTYKVDADQLFGAMYLHMQVPQLNLAQIGLEKLAAQAHK
ELTYKGLFVSSETEHLTGGNYDLQKTVTYDKEDLETLLDYNIKLFRSAAEVIRSGNFAINPYTEDGKSVQGDQIKSITHF
EADRHMGQARKLLRLPKKGKKEAYLELMAKTEEENQMQVSENTISFPVIDHAVRVDKKDQEDNHVD

Nucleotide


Download         Length: 3321 bp        

>NTDB_id=448351 STR1_RS08065 WP_095559443.1 1577741..1581061(-) (rexB) [Streptococcus thermophilus strain R1]
ATGAAATTACTTTATACGGATATGTCTCAGGATTTAACAGAAATTCTGACGGAGCAGGCGTCTAGCTATGCTCAAAAGGG
AAAGAGGGTTTTTTATATTGCTCCTAGTGCCCTATCCTTTGAAAAGGAGCGAAAGGTTTTAGAATACCTGCCTCAGTCAG
CATCTTTTGACATTACGGTGACTCGTTTTACTCAGATGGCTAGGTATTTTATTCTCAATACGAGTAACCCAAAGACTCAG
TTGGATGATACAGGTTTGGCCATGATTTTTTATAAAGTGTTGTTGCACATGGGCGATGATGAGCTCAAGGTCTATGGCCG
TTTGCGTAAGGATAGCAACTTTATTAATCAATTAGTGGACCTTTATAAAGAGTTGCAGCAGGCCAATATGACAGTATTGG
ATTTGCAGCATTTGGATCAGGTTGAAAAACAAGAGGATTTGGTAAGGATTTTCAGTGCAGCTCAGGACCTCTTGTTGGCA
GGAGATTTTGACAATCAATCAAAGCTTAGTGCCTTCTTTAAGGAAATTACCTCAGGGCATCTGGATGAGGCCTTGAGTAA
CACAGTTTTGGTCATTGATGGTTTTACCCGTTTCTCGGCTGAGGAGGAGGCTCTGGTTGCACTCTTGAACGACAAGTGCC
ACCAGATTGTAGTGGGGACCTATACTAGTCGAAAAGCTTATAAGGCCAATTTTGTTTATGGCAATGTTTATCAAGCCTCA
GTAGATTTCTTGAGGACTTTGGCTCAGACCTATAAGGTGATACCCGACTACGTGACGACAGACAAGGAGGGCAATCGTTC
TTTTGCGCGTATTAGTCGTCTTTTGGAGAGCCGTCATGACTTTAGTACGGTAGATGAGACGGTAACTGAGCAGGATAAGC
ATGCCCTGAAGGTTTGGGAAGTGGTCAACCAGAAAGAAGAAGTGGCCCAGGTTGCCAAGAGTATTCGCCAGTTGCTGGCA
GATGGCAAGCGTTACAAGGATATTTTGGTCTTGCTTGGTGACGAGGAGAGTTATAAGCTTCACGTGGGGCAGATTTTCCG
AAAATTTGATATTCCTTATTATTTTGGTAAGGAAGAAAGCATGTCTAGCCATCCTTTGGTGGAGTTTGTGGATTCGCTAG
AGCGTATCAAGCGCTATAACTACCGTGCTGAGGATTTGCTTAACCTTGTAAAATCCGGTCTCTATGGTGGTTTTGCTCAA
GAGGATTTAGACCTTTTTGAGTATTATGTCAATTTTGCGGATATCAAGGGGCGTCATAAATTCTTGTCTGATTTTACAGC
TAATAGTCGTGATAAGTATAATTTAGACCAGATCAATGCCTTGCGGTCACAATTGATAGAGCCCTTGGACAAGTTTCTTA
ATAGTCGCAAACAAAAGGGATCTAGTCTACTCAAGAAACTGGTGGTCTTTTTAGAGGCTGTGCAACTGCCAAGTCAGATG
TTTGAATTGTCCACCAAGGCCAGTGAAGCTGAAAAAGAACAGAATGAACAGGTTTGGAAGGCTTTCACTCATATCTTGGA
GCAGGTTGAGACTATCTTTGGAGACGAATCGCTCTCAGTGGACGACTTTTTGTCTATCTTGCGTTCGGGAATGTTGGCCT
GTGATTACCGTACGGTTCCAGCCACTGTTGATGTGGTCAATGTGAAAAAATACGACTTAATACAGCCACATTCGGCTCCG
TATGTTTTTGCCTTGGGGATGACCCAGTCACATTTTCCTAAGGTAGGACAAAATAAGAGTCTTTTGTCTGATGAGGAGCG
TAGTCGTATCAATGAGGCGACGGATGAGCACAGGAGATTGGATATTGTTACGCAGATCAATAGTAAGCGAGGTCATTTTG
TGGCTATGTCGCTTTTCAATGCTGCTAGTGAACAATTAGTGCTTAGTCAGCCACAAATTATAAATGAAAGTCAAGATGAC
ATGTCTGTTTATTTGAAGGAGCTTCTTGACCTTGGTATTCCATTGGTGGAAAAGGGACGCAATCGTTTCGAAGCAAAGGG
GGACCAGATTGGGAACTATAGAGACCTTCTGTCGACTGTCATTGCCCTTAACAGTAGTCATTTGGATCTTGACTTGGACA
AAGAAACCCAGACTTTCTGGTCGGTTGCTGTACGCTATCTCCGTAAGCGACTTGATAAGGATCAAGTCTTGATTCCAAAG
GTGATTGACGATGTGACGACAACCAAGGTGGACGATCAGGTCATGCAGTTGGTCTTTCCGGAGGAAGAACCACTGAAATT
ATCAGCTACAGCTCTGACGACCTTCTATAACAACCAATATCTTTATTTCTTGCGTTATGTTTTGGAACTTGAGGAGCTAG
AGTCTATCCATCCGGATGCTCGACACCACGGGACTTATTTACACCGAGTCTTTGAGCGTGTGATGGGTGATTCGTCATCA
GAAAGCTTCGATGATAAATTGGAAAAGGCCATTGCTCAGACCAATCAGGATCAACCTTTTGAAATTCTCTATACCGAGGA
CCAAGAGAGTCGTTTCTCTCGTCAGATTTTGGAGGACATTGCGCGTTCAACTGCCAGTGTTCTACGTGATAATGCGGCGG
TTAAGGTTGAGCGTGAGGAAGTCAAGTTTGACTTGCTTTTAGCAAATAGCATCAAGATTACTGGGATTATTGACCGAGTG
GACCGTTTAACAGATGGTGCTCTGGGTGTTGTTGACTATAAAACAGGTAAAAATGTCTTTGATATTCAGAAATTCTACAA
TGGCCTCAGTCCGCAATTGGTGACCTATCTGGAGGCTCTCCGTCAAACCTATAAGGTTGATGCTGATCAACTTTTTGGGG
CTATGTATCTTCACATGCAGGTCCCACAGCTTAACCTAGCTCAGATTGGTTTGGAAAAGCTAGCGGCTCAGGCTCATAAG
GAATTGACTTACAAGGGACTTTTTGTGTCTTCAGAAACGGAGCATTTGACTGGTGGAAACTATGATCTGCAAAAGACTGT
CACCTATGACAAGGAGGATTTAGAAACCTTGTTGGACTACAATATTAAGCTCTTTAGGAGTGCTGCTGAAGTTATTCGAA
GTGGGAATTTTGCGATCAATCCTTATACTGAGGATGGCAAGTCTGTTCAAGGGGATCAAATCAAGTCTATTACTCACTTC
GAGGCCGACCGCCACATGGGACAGGCTCGTAAACTCTTACGTTTACCCAAAAAGGGCAAGAAGGAAGCCTATTTGGAGTT
GATGGCAAAAACTGAGGAAGAGAATCAGATGCAAGTTTCTGAAAATACTATCTCCTTTCCAGTCATTGATCATGCTGTGA
GAGTAGACAAAAAAGACCAGGAGGATAACCATGTTGACTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(747-1023)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

43.107

98.373

0.424