Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   STR1_RS01245 Genome accession   NZ_CP065486
Coordinates   234569..235165 (-) Length   198 a.a.
NCBI ID   WP_002949408.1    Uniprot ID   Q5M648
Organism   Streptococcus thermophilus strain R1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 229569..240165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STR1_RS01230 (STR1_01225) - 230250..230690 (+) 441 WP_095559220.1 DUF805 domain-containing protein -
  STR1_RS01235 (STR1_01230) pepC 230792..232129 (+) 1338 WP_014607929.1 aminopeptidase C -
  STR1_RS01240 (STR1_01235) pbp1a 232239..234569 (-) 2331 WP_095559221.1 penicillin-binding protein PBP1A -
  STR1_RS01245 (STR1_01240) recU 234569..235165 (-) 597 WP_002949408.1 Holliday junction resolvase RecU Machinery gene
  STR1_RS01250 (STR1_01245) - 235242..235757 (+) 516 WP_095559222.1 DUF1273 domain-containing protein -
  STR1_RS01255 (STR1_01250) gpsB 235866..236198 (+) 333 WP_095559223.1 cell division regulator GpsB -
  STR1_RS01265 (STR1_01260) - 236731..237897 (+) 1167 WP_014607933.1 class I SAM-dependent RNA methyltransferase -
  STR1_RS01270 (STR1_01265) - 237900..239762 (+) 1863 WP_095559224.1 cell division site-positioning protein MapZ family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22827.38 Da        Isoelectric Point: 10.1106

>NTDB_id=448284 STR1_RS01245 WP_002949408.1 234569..235165(-) (recU) [Streptococcus thermophilus strain R1]
MVNYPHQISRKIAQVRTKKSNRVDFANRGMNFESAINATNDYYLSRGLAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVYKGYYIDFEAKETRQKTSMPMKNFHAHQIKHMSQVINQDGICFVLLHFSTLKETYLLPAKDLIAFYQIDKG
TKSMPLDYIKKRGYAIAESAYPQVPYLEIIEKLLGGNT

Nucleotide


Download         Length: 597 bp        

>NTDB_id=448284 STR1_RS01245 WP_002949408.1 234569..235165(-) (recU) [Streptococcus thermophilus strain R1]
ATGGTAAACTATCCCCATCAGATATCTCGTAAGATAGCACAAGTACGTACTAAAAAATCTAATAGAGTTGACTTTGCCAA
TCGGGGGATGAACTTTGAATCTGCTATTAATGCGACTAATGATTACTATTTGTCGCGTGGCTTAGCCGTTATTCATAAGA
AACCTACACCGGTTCAGATTGTCAAAGTCGATTATCCAAAACGCTCACGAGCAAAGATTGTAGAAGCTTACTTTAGGCAA
GCCTCAACTACTGACTACTCTGGCGTTTACAAAGGATACTATATTGATTTTGAAGCCAAAGAGACACGGCAAAAGACATC
TATGCCTATGAAAAACTTTCATGCGCATCAAATTAAGCACATGTCTCAGGTCATCAATCAAGATGGAATCTGCTTCGTGC
TACTCCACTTTTCAACGCTTAAGGAAACCTACCTTCTGCCTGCCAAAGACTTAATCGCTTTTTATCAAATTGATAAGGGG
ACAAAATCAATGCCTCTTGATTATATCAAAAAAAGAGGTTATGCAATCGCAGAATCAGCTTATCCTCAAGTTCCTTATTT
AGAGATCATTGAAAAATTATTAGGTGGTAACACATAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M648

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

49.754

100

0.51