Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   STMM20_RS08790 Genome accession   NZ_CP065485
Coordinates   1726045..1726641 (+) Length   198 a.a.
NCBI ID   WP_347103545.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain MM20     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1721045..1731641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STMM20_RS08765 (STMM20_08735) - 1721448..1723310 (-) 1863 WP_014607934.1 cell division site-positioning protein MapZ family protein -
  STMM20_RS08770 (STMM20_08740) - 1723313..1724479 (-) 1167 WP_082309171.1 class I SAM-dependent RNA methyltransferase -
  STMM20_RS08780 (STMM20_08750) gpsB 1725012..1725344 (-) 333 WP_014607932.1 cell division regulator GpsB -
  STMM20_RS08785 (STMM20_08755) - 1725453..1725968 (-) 516 WP_095559222.1 DUF1273 domain-containing protein -
  STMM20_RS08790 (STMM20_08760) recU 1726045..1726641 (+) 597 WP_347103545.1 Holliday junction resolvase RecU Machinery gene
  STMM20_RS08795 (STMM20_08765) pbp1a 1726641..1728962 (+) 2322 WP_347103546.1 penicillin-binding protein PBP1A -
  STMM20_RS08800 (STMM20_08770) pepC 1729072..1730409 (-) 1338 WP_011680700.1 aminopeptidase C -
  STMM20_RS08805 (STMM20_08775) - 1730511..1730951 (-) 441 WP_347103547.1 DUF805 domain-containing protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22775.32 Da        Isoelectric Point: 10.1109

>NTDB_id=448259 STMM20_RS08790 WP_347103545.1 1726045..1726641(+) (recU) [Streptococcus thermophilus strain MM20]
MVNYPHQISRKMAQVSTKKSNRVDFANRGMNFESAINATNNYYLSRGLAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVYKGYYIDFEAKETRQKTSMPMKNFHAHQIKHMSQVINQDGICFVLLHFSTLKETYLLPAKDLIAFYQIDKG
TKSMPLDYIKKRGYAIAESAYPQVPYLEIIEKLLGGNT

Nucleotide


Download         Length: 597 bp        

>NTDB_id=448259 STMM20_RS08790 WP_347103545.1 1726045..1726641(+) (recU) [Streptococcus thermophilus strain MM20]
ATGGTAAACTATCCCCATCAGATATCTCGTAAGATGGCACAAGTAAGTACTAAAAAATCTAATAGAGTTGACTTTGCCAA
TCGGGGGATGAACTTTGAATCTGCTATCAATGCGACTAATAATTACTATTTGTCGCGTGGCTTAGCCGTTATTCATAAGA
AACCTACACCTGTTCAGATCGTCAAAGTCGATTATCCAAAACGCTCACGAGCAAAGATTGTAGAAGCTTACTTTAGGCAA
GCCTCAACTACTGACTACTCTGGCGTTTACAAAGGATACTATATTGATTTTGAAGCCAAAGAGACACGGCAAAAGACATC
TATGCCTATGAAAAACTTTCATGCGCATCAAATTAAGCACATGTCTCAGGTCATCAATCAAGATGGAATCTGCTTCGTGC
TACTCCACTTTTCAACGCTTAAGGAAACCTACCTTCTGCCTGCCAAAGACTTAATCGCTTTTTATCAAATTGATAAGGGG
ACAAAATCAATGCCTCTTGATTATATCAAAAAAAGAGGTTATGCAATCGCAGAATCAGCTTATCCTCAAGTTCCTTATTT
AGAGATCATTGAAAAATTATTAGGTGGTAACACATAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

50.505

100

0.505