Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HPY99_RS20360 Genome accession   NZ_CP053855
Coordinates   4245818..4246447 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 258E     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4240818..4251447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY99_RS20345 (HPY99_20260) helD 4241060..4243114 (-) 2055 WP_000420533.1 DNA helicase IV -
  HPY99_RS20350 (HPY99_20265) yccF 4243237..4243683 (+) 447 WP_124783512.1 YccF domain-containing protein -
  HPY99_RS20355 (HPY99_20270) yccS 4243693..4245855 (+) 2163 WP_000875020.1 YccS family putative transporter -
  HPY99_RS20360 (HPY99_20275) sxy/tfoX 4245818..4246447 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HPY99_RS20365 (HPY99_20280) sulA 4246666..4247175 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HPY99_RS20370 (HPY99_20285) ompA 4247532..4248572 (+) 1041 WP_000750416.1 porin OmpA -
  HPY99_RS20375 (HPY99_20290) matP 4248648..4249100 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HPY99_RS20380 (HPY99_20295) ycbZ 4249286..4251046 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=448239 HPY99_RS20360 WP_000839153.1 4245818..4246447(-) (sxy/tfoX) [Escherichia coli strain 258E]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=448239 HPY99_RS20360 WP_000839153.1 4245818..4246447(-) (sxy/tfoX) [Escherichia coli strain 258E]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1