Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CUP3940_RS05995 Genome accession   NZ_CP053849
Coordinates   1163998..1164939 (+) Length   313 a.a.
NCBI ID   WP_004277633.1    Uniprot ID   A0A828QX19
Organism   Campylobacter upsaliensis RM3940     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1158998..1169939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CUP3940_RS05975 (CUP3940_1167) cysS 1159019..1160383 (-) 1365 WP_176318518.1 cysteine--tRNA ligase -
  CUP3940_RS05980 (CUP3940_1168) murJ 1160370..1161824 (-) 1455 WP_176318519.1 murein biosynthesis integral membrane protein MurJ -
  CUP3940_RS05985 (CUP3940_1169) - 1161882..1163069 (-) 1188 WP_176318520.1 glycosyltransferase family 8 protein -
  CUP3940_RS05990 (CUP3940_1170) - 1163097..1163948 (-) 852 WP_004277632.1 glycosyltransferase family 2 protein -
  CUP3940_RS05995 (CUP3940_1171) waaF 1163998..1164939 (+) 942 WP_004277633.1 glycosyltransferase family 9 protein Regulator
  CUP3940_RS06000 (CUP3940_1172) - 1164929..1165462 (-) 534 WP_004277634.1 HyaD/HybD family hydrogenase maturation endopeptidase -
  CUP3940_RS06005 (CUP3940_1173) cybH 1165459..1166151 (-) 693 WP_004277636.1 Ni/Fe-hydrogenase, b-type cytochrome subunit -
  CUP3940_RS06010 (CUP3940_1174) - 1166161..1167876 (-) 1716 WP_115636028.1 nickel-dependent hydrogenase large subunit -
  CUP3940_RS06015 (CUP3940_1175) - 1167879..1169018 (-) 1140 WP_004277638.1 hydrogenase small subunit -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 35593.36 Da        Isoelectric Point: 10.3482

>NTDB_id=448153 CUP3940_RS05995 WP_004277633.1 1163998..1164939(+) (waaF) [Campylobacter upsaliensis RM3940]
MKIFINLPTWLGDCIMASAAIYGIKEQLKEAEFVFFGSFVATTLFKDFPNSSFIVEDKKRRYFQALSLRKNHHFNLAFSF
RSALSARLILKIIKAKKKFCFDKTIIKEEHQVLKYLNFVQKSLNFQASQELKLPLNVKFKTPLILKNGKKILALNPGASY
GSAKRWSEEYFAKVGLYFAKDYEIIILGAGKEEAKICAKICEILAQNGIKAKNLCNKTSIYTLTQNIALSDLFLTNDSGA
MHLGAALKVKMLVLFGPTKFTQTSPWQSKNAKIIHLNLACMPCMKRVCPLKHHKCMQDLTPQMVIEKLKEFKA

Nucleotide


Download         Length: 942 bp        

>NTDB_id=448153 CUP3940_RS05995 WP_004277633.1 1163998..1164939(+) (waaF) [Campylobacter upsaliensis RM3940]
ATGAAAATTTTTATCAATCTTCCCACTTGGCTAGGCGATTGCATTATGGCTAGTGCGGCGATTTATGGCATTAAAGAGCA
GCTTAAAGAAGCGGAATTTGTCTTTTTTGGCTCTTTTGTAGCGACAACACTTTTTAAAGATTTTCCTAATTCTAGCTTCA
TAGTGGAGGATAAAAAAAGGCGTTATTTTCAAGCTCTTTCCTTGCGTAAAAATCATCATTTTAATCTCGCTTTTTCCTTT
CGCTCTGCCCTTTCAGCTAGGCTCATTTTAAAAATCATCAAAGCTAAGAAAAAATTTTGTTTTGATAAAACTATCATTAA
AGAAGAGCATCAGGTTTTAAAATACTTAAATTTCGTTCAAAAATCCCTTAATTTCCAAGCTTCGCAAGAGTTAAAGCTCC
CCCTTAATGTCAAATTTAAAACGCCTCTAATTCTTAAAAATGGCAAAAAAATTCTAGCCTTAAATCCGGGTGCTAGCTAT
GGAAGTGCGAAACGCTGGAGCGAGGAGTATTTCGCTAAAGTTGGGCTTTATTTTGCTAAAGATTATGAAATTATCATTTT
AGGAGCAGGTAAAGAAGAAGCTAAAATTTGTGCTAAAATCTGCGAAATTCTTGCACAAAATGGCATTAAAGCTAAGAATT
TATGCAATAAAACAAGCATTTATACCCTTACGCAAAATATCGCCCTAAGTGATCTTTTTCTCACAAATGACAGCGGTGCT
ATGCATTTAGGTGCAGCTTTAAAAGTCAAAATGCTTGTGCTATTTGGACCAACCAAATTCACGCAAACTTCTCCTTGGCA
AAGTAAAAATGCCAAAATTATCCATCTTAATCTAGCCTGTATGCCCTGCATGAAGCGTGTTTGTCCGCTAAAGCATCACA
AATGTATGCAGGATTTAACGCCGCAAATGGTTATAGAAAAATTAAAAGAATTTAAGGCTTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(107-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A828QX19

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.379

99.361

0.62