Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   CUP3940_RS02620 Genome accession   NZ_CP053849
Coordinates   502750..503178 (-) Length   142 a.a.
NCBI ID   WP_115635611.1    Uniprot ID   -
Organism   Campylobacter upsaliensis RM3940     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 497750..508178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CUP3940_RS02600 (CUP3940_0507) grpE 498833..499330 (-) 498 WP_004276976.1 nucleotide exchange factor GrpE -
  CUP3940_RS02605 (CUP3940_0508) - 499327..500112 (-) 786 WP_004276977.1 HrcA family transcriptional regulator -
  CUP3940_RS02610 (CUP3940_0509) aat 500273..500905 (-) 633 WP_176318284.1 leucyl/phenylalanyl-tRNA--protein transferase -
  CUP3940_RS02615 (CUP3940_0510) - 500915..502753 (-) 1839 WP_176318285.1 primosomal protein N' -
  CUP3940_RS02620 (CUP3940_0511) Cj0683 502750..503178 (-) 429 WP_115635611.1 type II secretion system protein Machinery gene
  CUP3940_RS02625 (CUP3940_0512) - 503156..503428 (-) 273 WP_004276981.1 hypothetical protein -
  CUP3940_RS02630 (CUP3940_0513) - 503418..503648 (-) 231 WP_027304113.1 hypothetical protein -
  CUP3940_RS02635 (CUP3940_0514) uvrB 503766..505736 (+) 1971 WP_176318286.1 excinuclease ABC subunit UvrB -
  CUP3940_RS02640 - 505752..505997 (+) 246 WP_176318287.1 hypothetical protein -
  CUP3940_RS02645 (CUP3940_0515) - 506050..507678 (+) 1629 WP_004276984.1 LTA synthase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16312.32 Da        Isoelectric Point: 8.4561

>NTDB_id=448145 CUP3940_RS02620 WP_115635611.1 502750..503178(-) (Cj0683) [Campylobacter upsaliensis RM3940]
MSLKKAFSLLELVFVILIIAILTGIALPFLKQNKEEAKLLKLKMDYEMLNSALSLMRNEADLKNLAYINELDQAAILKEN
ETLFYCQNCSFSLLSTPIYSSKIGWIKNGVNQYSFFLNPQKSVEFRYENGLLKCLKNCKELL

Nucleotide


Download         Length: 429 bp        

>NTDB_id=448145 CUP3940_RS02620 WP_115635611.1 502750..503178(-) (Cj0683) [Campylobacter upsaliensis RM3940]
ATGAGCCTCAAAAAAGCCTTTAGTCTCCTTGAACTTGTTTTTGTGATTCTCATCATCGCTATTTTAACGGGCATTGCCCT
GCCATTTCTTAAGCAAAATAAAGAAGAAGCTAAACTTTTAAAACTTAAAATGGACTACGAAATGCTAAATTCCGCCCTAA
GTCTAATGCGAAATGAAGCGGATTTAAAAAATTTAGCTTATATTAATGAGCTGGATCAGGCGGCGATTTTAAAAGAAAAT
GAAACCCTATTTTACTGCCAAAACTGCTCTTTTAGCCTTTTAAGCACTCCTATTTATTCTAGCAAAATAGGCTGGATCAA
AAATGGAGTCAATCAATATAGCTTTTTTTTAAACCCTCAAAAAAGCGTGGAATTTCGCTATGAAAATGGGCTTTTAAAAT
GCCTTAAAAATTGCAAAGAACTTTTATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.483

100

0.556