Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CORN_RS06590 Genome accession   NZ_CP053848
Coordinates   1289536..1290456 (-) Length   306 a.a.
NCBI ID   WP_066008504.1    Uniprot ID   -
Organism   Campylobacter ornithocola strain LMG 29815     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1284536..1295456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CORN_RS06570 (CORN_1296) cysK 1285506..1286408 (-) 903 WP_066008501.1 cysteine synthase A -
  CORN_RS06575 (CORN_1297) - 1286505..1286807 (-) 303 WP_066008502.1 HU family DNA-binding protein -
  CORN_RS06580 (CORN_1298) - 1286886..1288022 (-) 1137 WP_066008503.1 hypothetical protein -
  CORN_RS06585 (CORN_1299) - 1288031..1289535 (-) 1505 Protein_1274 MBOAT family O-acyltransferase -
  CORN_RS06590 (CORN_1300) waaF 1289536..1290456 (-) 921 WP_066008504.1 lipopolysaccharide heptosyltransferase II Regulator
  CORN_RS06595 (CORN_1301) - 1290509..1291333 (+) 825 WP_066008505.1 glycosyltransferase family 2 protein -
  CORN_RS06600 (CORN_1302) - 1291313..1292029 (-) 717 WP_047208541.1 acylneuraminate cytidylyltransferase family protein -
  CORN_RS06605 (CORN_1303) - 1292016..1293047 (-) 1032 WP_066008506.1 nucleotidyltransferase family protein -
  CORN_RS06610 (CORN_1304) neuC 1293044..1294204 (-) 1161 WP_094750324.1 UDP-N-acetylglucosamine 2-epimerase -
  CORN_RS06615 (CORN_1305) neuB 1294194..1295204 (-) 1011 WP_066008508.1 N-acetylneuraminate synthase -

Sequence

Protein


Download         Length: 306 a.a.        Molecular weight: 34827.83 Da        Isoelectric Point: 10.2148

>NTDB_id=448135 CORN_RS06590 WP_066008504.1 1289536..1290456(-) (waaF) [Campylobacter ornithocola strain LMG 29815]
MNIFINLPTWLGDAVMSSVAIYAIKEKYPQAKFTFYGSFVSTELFKRFENAQILVENKKQRYRQILQARKNLGKFDLAFS
FRSAFSSKIVLNLIKTKKRFYFDKNILKEEHQVLKYLNFIEKALNFKATSNALKLPIKAKSTQKILGINPGAHFGSAKRW
EASYFARVAKEFSSTHQILIFGVESEREICDEIEHYLLKEGIKAKNLCGKTSIYTLCKNISMLDLLITNDSGPMHIGAAY
GVKTVAVFGSTKFSQTSPWQENAKIAHLDLACMPCMQKVCPLKHHKCMKDLKPDVVINLARNFSGV

Nucleotide


Download         Length: 921 bp        

>NTDB_id=448135 CORN_RS06590 WP_066008504.1 1289536..1290456(-) (waaF) [Campylobacter ornithocola strain LMG 29815]
ATGAATATTTTTATCAACCTTCCTACTTGGCTTGGAGATGCGGTGATGTCTAGTGTGGCTATTTATGCTATAAAAGAAAA
ATACCCCCAAGCTAAATTTACTTTTTATGGTTCTTTTGTAAGTACAGAGCTTTTTAAACGCTTTGAAAATGCTCAAATTT
TAGTAGAAAATAAAAAGCAAAGATATAGGCAGATTTTACAAGCTAGAAAAAATCTTGGTAAATTTGATCTAGCTTTTTCA
TTTCGCTCGGCATTTTCAAGTAAGATTGTTTTAAATCTAATCAAAACAAAGAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACATCAAGTTTTAAAATACTTAAATTTCATAGAAAAAGCTTTAAATTTTAAAGCCACTTCAAATGCTTTAA
AACTCCCTATAAAAGCAAAATCAACTCAAAAAATTTTAGGTATAAACCCAGGTGCACATTTTGGAAGTGCGAAAAGATGG
GAAGCGAGCTATTTTGCAAGGGTAGCAAAAGAATTTAGCTCCACTCATCAAATTTTAATCTTTGGAGTAGAAAGTGAGAG
AGAAATTTGTGATGAAATTGAGCATTATCTTTTAAAAGAAGGCATAAAAGCAAAAAATCTTTGTGGTAAAACTAGTATTT
ATACTTTATGTAAAAATATTTCTATGCTTGATTTACTCATCACAAATGATAGTGGTCCTATGCATATAGGTGCAGCTTAT
GGGGTAAAAACGGTGGCTGTTTTTGGCTCGACCAAATTCAGCCAAACATCGCCTTGGCAAGAAAATGCTAAAATAGCTCA
TCTTGATCTAGCTTGTATGCCTTGTATGCAAAAGGTCTGCCCTTTAAAACACCACAAATGCATGAAAGATTTAAAGCCTG
ATGTGGTGATAAATTTAGCAAGAAATTTTTCAGGAGTATAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(109-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.537

100

0.66