Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CORI_RS02345 Genome accession   NZ_CP053845
Coordinates   463415..464368 (-) Length   317 a.a.
NCBI ID   WP_173030649.1    Uniprot ID   -
Organism   Campylobacter sp. CCUG 57310     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 458415..469368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CORI_RS02315 (CORI_0461) - 458910..459221 (-) 312 WP_173030643.1 c-type cytochrome -
  CORI_RS02320 (CORI_0462) - 459344..459652 (-) 309 WP_173030644.1 c-type cytochrome -
  CORI_RS02325 (CORI_0463) gmhB 459773..460288 (+) 516 WP_173030645.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  CORI_RS02330 (CORI_0464) rfaD 460285..461274 (+) 990 WP_173030646.1 ADP-glyceromanno-heptose 6-epimerase -
  CORI_RS02335 (CORI_0465) rfaE1 461267..462673 (+) 1407 WP_173030647.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  CORI_RS02340 (CORI_0466) gmhA 462660..463226 (+) 567 WP_173030648.1 D-sedoheptulose 7-phosphate isomerase -
  CORI_RS02345 (CORI_0467) waaF 463415..464368 (-) 954 WP_173030649.1 lipopolysaccharide heptosyltransferase II Regulator
  CORI_RS02350 (CORI_0468) - 464352..465383 (-) 1032 WP_173030650.1 glycosyltransferase family 4 protein -
  CORI_RS02355 (CORI_0469) - 465380..466450 (-) 1071 WP_173030651.1 glycosyltransferase family 9 protein -
  CORI_RS02360 (CORI_0470) - 466460..467557 (-) 1098 WP_173030652.1 glycosyltransferase -
  CORI_RS02365 (CORI_0471) - 467679..468959 (+) 1281 WP_173030653.1 O-antigen ligase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35701.87 Da        Isoelectric Point: 9.9201

>NTDB_id=448113 CORI_RS02345 WP_173030649.1 463415..464368(-) (waaF) [Campylobacter sp. CCUG 57310]
MHIFIELPTWLGDAVMSSPAIESIVANFSDAKITFFGSFAACELFRPHPNCKNIVIDGSKNSKNRFLTLAKTARSLGEFD
IAISFRSSFASSFLLFCLKAQKKFKFKKQNLQLHQVLKYLNFIQNSLNLKEAKNELKLYFTPFKFQKKILALNPGASYGS
AKRWYPNYFAKVALHFKDEFEILIFGGKGELDICRQIEQILASNGVTCQNLAGKTSIQELCEKIGGIKEIGGIFITNDSG
PMHIAAAYKVPTIALFGPTKFDETSPWKNENARILHLNLNCMPCMKRVCPIKTHECMKNLTPNLVIKAAKELKREIS

Nucleotide


Download         Length: 954 bp        

>NTDB_id=448113 CORI_RS02345 WP_173030649.1 463415..464368(-) (waaF) [Campylobacter sp. CCUG 57310]
GTGCATATCTTCATTGAATTGCCCACTTGGCTTGGCGATGCGGTGATGAGTTCGCCCGCAATTGAAAGCATAGTTGCAAA
TTTTAGCGATGCTAAGATCACGTTTTTTGGCTCTTTTGCGGCATGCGAGCTATTTAGACCTCATCCAAACTGCAAAAATA
TCGTCATAGACGGTAGTAAAAATAGTAAAAATAGGTTTTTAACTCTAGCTAAAACGGCTAGGAGTTTGGGCGAATTTGAT
ATCGCAATTAGCTTTAGAAGTAGTTTTGCAAGCAGTTTTTTGCTATTTTGCTTAAAAGCGCAGAAAAAATTTAAGTTCAA
AAAACAAAACTTACAACTTCATCAAGTCTTAAAATACTTAAATTTCATCCAAAATTCACTAAATTTAAAAGAAGCAAAAA
ATGAGCTAAAGCTATACTTTACCCCTTTTAAATTTCAGAAAAAAATACTCGCGCTAAACCCTGGAGCAAGCTACGGAAGT
GCAAAAAGATGGTATCCAAACTACTTTGCTAAAGTTGCTTTGCACTTTAAAGACGAGTTTGAAATTTTAATTTTTGGCGG
AAAAGGCGAACTTGATATTTGCCGGCAAATAGAGCAAATTTTAGCCTCAAACGGAGTCACATGCCAAAATTTAGCCGGCA
AAACAAGCATACAAGAGCTTTGCGAAAAAATCGGAGGGATTAAAGAAATCGGAGGGATATTTATAACCAACGATAGCGGT
CCTATGCACATAGCAGCCGCTTACAAAGTGCCTACCATAGCTCTTTTTGGACCTACTAAATTTGACGAGACAAGTCCTTG
GAAAAACGAAAACGCAAGAATTTTACATCTAAATTTAAACTGCATGCCTTGCATGAAGCGAGTTTGTCCGATAAAAACGC
ATGAATGTATGAAAAATTTAACTCCGAATTTAGTAATCAAAGCCGCCAAAGAGCTAAAAAGAGAAATATCCTAG

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(124-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

100

0.508