Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   CCORG_RS09095 Genome accession   NZ_CP053842
Coordinates   705015..705617 (+) Length   200 a.a.
NCBI ID   WP_172658550.1    Uniprot ID   -
Organism   Campylobacter corcagiensis strain LMG 27932     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 700015..710617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCORG_RS03745 (CCORG_0745) era 700549..701427 (+) 879 WP_025803586.1 GTPase Era -
  CCORG_RS03750 (CCORG_0746) - 701486..703024 (+) 1539 WP_025803585.1 hypothetical protein -
  CCORG_RS03755 (CCORG_0747) - 703021..703668 (+) 648 WP_025803584.1 hypothetical protein -
  CCORG_RS03760 (CCORG_0748) - 703665..704054 (+) 390 WP_025803583.1 hypothetical protein -
  CCORG_RS09090 - 704035..704862 (+) 828 WP_172658549.1 hypothetical protein -
  CCORG_RS09095 ctsD 705015..705617 (+) 603 WP_172658550.1 hypothetical protein Machinery gene
  CCORG_RS03775 (CCORG_0750) - 705610..706431 (+) 822 WP_025803581.1 ATP-binding protein -
  CCORG_RS03780 (CCORG_0751) - 706424..707299 (+) 876 WP_025803580.1 hypothetical protein -
  CCORG_RS03785 (CCORG_0752) - 707296..707835 (+) 540 WP_025803579.1 hypothetical protein -
  CCORG_RS03790 (CCORG_0753) - 707840..709597 (+) 1758 WP_025803578.1 GspE/PulE family protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21639.65 Da        Isoelectric Point: 5.0167

>NTDB_id=448095 CCORG_RS09095 WP_172658550.1 705015..705617(+) (ctsD) [Campylobacter corcagiensis strain LMG 27932]
MINFLEMSGKTKTVSSPKVMTLNNQPAIITVGNVINYILSSNSVTSDSVSTEDNEQYSSFIGVLLNITPTIADDGKIMLR
INPSLSDFKYPGDDTKEASDNRKKAPDTIEKKISTVVTANSGDTVILGGLIEQKKGKDGTSVPVLSSIPLVGNLFKSTSD
VLRVTELVFIITPRLVNDTSRPIGDSLKELGFSKSLYTYE

Nucleotide


Download         Length: 603 bp        

>NTDB_id=448095 CCORG_RS09095 WP_172658550.1 705015..705617(+) (ctsD) [Campylobacter corcagiensis strain LMG 27932]
ATGATAAACTTTTTAGAAATGAGTGGAAAAACAAAAACTGTTTCTAGCCCAAAAGTTATGACTCTTAATAATCAACCAGC
TATTATAACTGTTGGTAATGTTATCAATTATATCCTATCTTCAAATAGTGTTACATCTGATAGTGTATCAACAGAGGATA
ATGAGCAGTATTCATCATTTATTGGTGTTCTTTTAAATATAACTCCTACGATTGCTGATGATGGCAAGATTATGCTTAGA
ATAAATCCATCTTTAAGTGATTTTAAATATCCAGGCGATGATACCAAAGAAGCGTCTGATAATAGAAAAAAAGCTCCTGA
TACAATAGAGAAGAAGATTTCAACTGTTGTCACTGCAAATAGTGGAGATACTGTAATACTTGGTGGTTTGATTGAGCAGA
AAAAAGGAAAAGATGGTACAAGTGTGCCAGTTCTTAGTTCTATACCATTGGTAGGAAATTTGTTTAAAAGTACTAGTGAT
GTTTTAAGAGTAACAGAACTTGTCTTTATTATAACTCCAAGGTTGGTTAACGATACTTCAAGACCTATTGGTGACTCTTT
AAAAGAGCTTGGCTTTTCTAAATCTTTATATACATATGAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(5-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

52.062

97

0.505