Detailed information NTG0448090

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: CCORG_RS06230
• Genome accession: NZ_CP053842
• Coordinates: 1214506..1215453 (+)
• Length: 315 a.a.
• NCBI ID: WP_025803226.1
• Uniprot ID: A0A7M1LDW7
• Organism: Campylobacter corcagiensis strain LMG 27932
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1209506..1220453

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CCORG_RS06210 (CCORG_1232)	-	1210237..1211313 (-)	1077	WP_025803230.1	glycosyltransferase family 9 protein	-
CCORG_RS06215 (CCORG_1233)	-	1211402..1212493 (+)	1092	WP_025803229.1	glycosyltransferase family 4 protein	-
CCORG_RS06220 (CCORG_1234)	-	1212488..1213417 (-)	930	WP_025803228.1	glycosyltransferase family 9 protein	-
CCORG_RS06225 (CCORG_1235)	-	1213491..1214522 (+)	1032	WP_025803227.1	glycosyltransferase family 4 protein	-
CCORG_RS06230 (CCORG_1236)	waaF	1214506..1215453 (+)	948	WP_025803226.1	lipopolysaccharide heptosyltransferase II	Regulator
CCORG_RS06235 (CCORG_1237)	-	1215440..1216000 (-)	561	WP_034971523.1	D-sedoheptulose 7-phosphate isomerase	-
CCORG_RS06240 (CCORG_1238)	rfaE1	1216006..1217385 (-)	1380	WP_025803224.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
CCORG_RS06245 (CCORG_1239)	rfaD	1217378..1218346 (-)	969	WP_025803223.1	ADP-glyceromanno-heptose 6-epimerase	-
CCORG_RS06250 (CCORG_1240)	gmhB	1218396..1218908 (-)	513	WP_034971506.1	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	-
CCORG_RS06255 (CCORG_1241)	mnmE	1218913..1220235 (-)	1323	WP_025803221.1	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	-

Sequence

Protein

• Length: 315 a.a.
• Molecular weight: 36019.19 Da
• Isoelectric Point: 10.0685

>NTDB_id=448090 CCORG_RS06230 WP_025803226.1 1214506..1215453(+) (waaF) [Campylobacter corcagiensis strain LMG 27932]
MKIFIELPTWLGDGVMASMAVENIALNFPKAKITFFGSFASTSLYQNHPNLEKIVIDESKKTKFRYIKLYQTIKSFDKFD
IAISFRSHFATKFSMFFLKAKKKYIFDKNSYQGHQAEKYLDFVTKSLNLDQKQSELKLYFKPKIFSKKTLGLNPGASYGS
AKRWYPSYFAEVATALSKEYDILIFGTKNEAKICNEIADILKEKNINFINLCGKTSIQELCQNIAGLSLFITNDSGPMHI
AASYKTPTIALFGPTRWFETSPYKNSKSKIVRLDLACMPCMKRTCPIKTHKCMKNLTPDMVLKAYKELNLTSINP

Nucleotide

• Length: 948 bp

>NTDB_id=448090 CCORG_RS06230 WP_025803226.1 1214506..1215453(+) (waaF) [Campylobacter corcagiensis strain LMG 27932]
ATGAAAATCTTTATTGAACTTCCTACTTGGCTTGGGGACGGGGTTATGGCAAGTATGGCTGTTGAAAACATAGCGTTAAA
TTTTCCTAAAGCAAAGATTACATTTTTTGGCTCATTTGCTTCAACTTCTTTATATCAAAATCATCCAAATTTAGAAAAAA
TAGTCATAGATGAGAGTAAAAAAACCAAATTTAGATATATAAAGCTTTATCAAACTATAAAAAGCTTTGATAAATTTGAT
ATAGCTATAAGTTTTCGAAGCCATTTTGCTACTAAATTTAGTATGTTTTTTCTAAAAGCTAAAAAAAAGTATATCTTTGA
TAAAAACTCATATCAAGGTCATCAAGCAGAAAAATATTTAGATTTTGTAACAAAAAGTCTAAATTTAGACCAAAAACAAA
GTGAACTAAAGTTATATTTTAAGCCAAAAATATTTAGCAAAAAAACACTCGGTCTAAATCCAGGTGCAAGCTATGGAAGT
GCGAAAAGATGGTATCCTAGTTACTTCGCAGAAGTTGCTACTGCTTTATCAAAAGAGTATGATATCTTAATATTTGGCAC
AAAAAATGAAGCTAAAATCTGTAACGAAATAGCTGATATCTTAAAAGAGAAAAATATAAATTTTATAAACTTATGTGGTA
AAACTAGCATCCAAGAGCTTTGCCAAAATATCGCAGGATTATCACTTTTTATAACAAACGATAGTGGTCCTATGCATATC
GCAGCGTCTTATAAAACACCAACTATAGCACTATTTGGTCCTACAAGGTGGTTTGAGACAAGCCCTTATAAAAACTCAAA
ATCTAAGATAGTTCGCCTTGATTTAGCCTGTATGCCTTGTATGAAAAGAACTTGCCCTATAAAAACGCACAAGTGCATGA
AAAATTTAACTCCTGATATGGTTTTAAAAGCCTACAAAGAGTTAAATTTAACCTCTATAAATCCTTAA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (123-288)

3D structure

• AlphaFold DB: A0A7M1LDW7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	52.681	100	0.53