Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   AVENP_RS05385 Genome accession   NZ_CP053840
Coordinates   1079786..1081636 (-) Length   616 a.a.
NCBI ID   WP_128358918.1    Uniprot ID   -
Organism   Arcobacter venerupis strain LMG 26156     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1074786..1086636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVENP_RS05355 (AVENP_1067) - 1075284..1075916 (+) 633 WP_172664223.1 LysE family translocator -
  AVENP_RS05360 (AVENP_1068) - 1075991..1076632 (-) 642 WP_128358923.1 adenylate kinase -
  AVENP_RS05365 (AVENP_1069) - 1076761..1077330 (+) 570 WP_128358922.1 adenylate kinase -
  AVENP_RS05370 (AVENP_1070) - 1077334..1078092 (+) 759 WP_128358921.1 molybdopterin-binding protein -
  AVENP_RS05375 (AVENP_1071) - 1078096..1078764 (-) 669 WP_128358920.1 tetratricopeptide repeat protein -
  AVENP_RS05380 (AVENP_1072) - 1078761..1079783 (-) 1023 WP_128358919.1 alanine racemase -
  AVENP_RS05385 (AVENP_1073) uvrC 1079786..1081636 (-) 1851 WP_128358918.1 excinuclease ABC subunit UvrC Machinery gene
  AVENP_RS05390 (AVENP_1074) - 1081761..1082408 (+) 648 WP_128358917.1 GNAT family N-acetyltransferase -
  AVENP_RS05395 (AVENP_1075) - 1082398..1083144 (-) 747 WP_128358916.1 choline/ethanolamine kinase family protein -
  AVENP_RS05400 (AVENP_1076) pnuC 1083125..1083706 (-) 582 WP_128358915.1 nicotinamide riboside transporter PnuC -
  AVENP_RS05405 (AVENP_1077) - 1083758..1084237 (-) 480 WP_128358999.1 glutathione peroxidase -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 71654.97 Da        Isoelectric Point: 9.2588

>NTDB_id=448065 AVENP_RS05385 WP_128358918.1 1079786..1081636(-) (uvrC) [Arcobacter venerupis strain LMG 26156]
MNLQDKLKQLPSDAGVYQYFDKQGHLLYIGKAKVLKNRVKSYFKFTPKLLPADKLGPRIYKMISEVETLEWIVVPNEHDA
LILENSLIKQLKPKYNILLRDDKTYPYIVIDYGEDFPRLEITRKIHKGKNIKYFGPYSTGAKDMLDSIYEIVPLVQKKSC
VKGKTACLFHQIKKCFAPCENKISKEEYSKIVENALEYIYNKTKLISKLNERMLQYSNDFRFEDAMMIRDRIKTIEKSQI
KSGIDLTTNEDIDIFTITASNKKAVIVRMFIRDGKIASSSHDFLKVDSFDESFDFDYEEAYKRAIINYYDNEIPLLPKEI
LVGIELSDTVELEEFLQIKFGKKIKIINPKKDKKKDIVQIALSNCEELLRIDSSKNQTTIYEELKDLFTLQTLPFRVESY
DNSHMMGQATVGAMVVWSEELNSFEKKSFRHYNLESKDEYSQMREMLIRRVESFEKNPAPDLWIIDGGETLLKLAYDIVS
SVGVNLDIIAVAKEKVDAKAHRAKGAAKDIIHYKDKNGEFKNLKLSTSDKRLQFVQRQRDEAHRFVINFHKKQKRAEDKQ
ISLLQIKGIGEAKIKKLLLYFGEFEKIKNASVEELKNVLNEKDAIIISNYFITPKD

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=448065 AVENP_RS05385 WP_128358918.1 1079786..1081636(-) (uvrC) [Arcobacter venerupis strain LMG 26156]
ATGAATCTACAAGACAAACTCAAACAACTTCCCTCTGATGCTGGTGTTTATCAATACTTTGATAAACAGGGTCATTTACT
CTATATAGGAAAAGCAAAAGTCCTTAAAAATAGAGTTAAATCATATTTTAAATTTACTCCAAAACTATTACCCGCTGATA
AGTTGGGGCCACGAATTTACAAAATGATTAGTGAAGTTGAAACCCTCGAATGGATAGTTGTTCCAAATGAACATGATGCT
TTGATTTTGGAAAACTCTTTAATCAAACAATTAAAACCAAAATACAATATTTTACTAAGAGATGATAAAACCTATCCTTA
TATTGTAATTGATTATGGTGAAGATTTTCCAAGACTTGAAATCACAAGAAAAATCCATAAAGGCAAAAATATCAAATATT
TTGGACCATACTCAACAGGTGCAAAAGATATGCTTGATAGCATCTATGAAATAGTTCCTCTTGTGCAAAAAAAATCTTGT
GTTAAGGGTAAAACCGCTTGTTTGTTCCATCAAATAAAAAAATGTTTTGCCCCATGTGAAAATAAAATCTCAAAAGAAGA
GTATTCAAAAATTGTAGAAAATGCCTTAGAATATATCTACAACAAAACAAAATTAATCTCAAAACTAAATGAAAGAATGT
TGCAATATTCAAATGATTTTAGATTTGAAGATGCAATGATGATAAGAGATAGAATAAAAACAATAGAAAAATCTCAAATA
AAATCAGGAATTGATTTAACAACAAATGAAGATATAGATATTTTCACAATCACAGCTTCTAATAAAAAAGCAGTAATTGT
ACGAATGTTCATAAGAGATGGAAAAATTGCATCTTCAAGCCATGACTTTTTAAAAGTTGATAGTTTTGATGAAAGTTTTG
ATTTTGATTATGAAGAAGCTTATAAAAGAGCAATTATTAACTACTATGATAATGAAATTCCTCTTTTACCAAAAGAGATT
TTAGTGGGAATTGAGTTATCTGATACGGTTGAACTTGAAGAGTTTCTACAAATCAAATTTGGCAAAAAGATTAAAATTAT
AAATCCTAAAAAAGACAAGAAAAAAGATATTGTTCAAATTGCCCTTAGTAATTGTGAAGAGCTTTTACGAATTGATTCAA
GTAAAAATCAAACAACTATTTATGAAGAGTTAAAAGATTTATTCACACTTCAAACACTTCCTTTTAGAGTTGAAAGTTAT
GATAACTCGCATATGATGGGACAAGCAACTGTAGGAGCTATGGTTGTTTGGAGTGAAGAGTTAAACTCTTTTGAAAAGAA
ATCTTTTAGACACTATAATCTTGAATCAAAAGATGAATATTCACAAATGAGAGAGATGTTAATAAGAAGAGTTGAAAGTT
TTGAAAAAAATCCAGCACCCGATTTATGGATTATTGATGGTGGAGAAACTCTTTTAAAATTAGCCTATGATATTGTTTCA
TCTGTTGGAGTAAATCTTGATATAATTGCGGTTGCAAAAGAGAAAGTTGATGCAAAGGCTCACAGAGCAAAAGGTGCAGC
AAAAGATATTATTCACTATAAAGATAAAAATGGAGAATTTAAAAATCTGAAATTATCAACAAGTGATAAAAGACTGCAAT
TTGTACAAAGACAAAGAGATGAAGCTCACAGATTTGTAATCAATTTTCACAAAAAACAAAAAAGAGCAGAAGACAAACAA
ATTTCACTATTACAAATCAAAGGAATAGGAGAAGCAAAAATCAAAAAACTTCTTTTATATTTTGGTGAATTTGAGAAAAT
CAAAAATGCATCTGTTGAAGAATTAAAAAATGTTTTAAATGAAAAAGATGCAATTATCATATCAAATTATTTTATTACCC
CAAAGGATTAA

Domains

Predicted by InterproScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(386-547)

UvrB/uvrC motif (UVR)

(204-237)

GIY-YIG catalytic domain (GIY-YIG)

(15-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

50.912

97.89

0.498