Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ALANTH_RS05220 Genome accession   NZ_CP053839
Coordinates   1045612..1046961 (-) Length   449 a.a.
NCBI ID   WP_026804262.1    Uniprot ID   -
Organism   Aliarcobacter lanthieri strain LMG 28516     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1040612..1051961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ALANTH_RS05200 (ALANTH_1041) murJ 1041634..1042956 (-) 1323 WP_029888311.1 murein biosynthesis integral membrane protein MurJ -
  ALANTH_RS05205 (ALANTH_1042) - 1042953..1044524 (-) 1572 WP_026807638.1 endonuclease/exonuclease/phosphatase family protein -
  ALANTH_RS05210 (ALANTH_1043) - 1044715..1045119 (+) 405 WP_026804260.1 Fur family transcriptional regulator -
  ALANTH_RS05215 (ALANTH_1044) ybeY 1045137..1045556 (-) 420 WP_026807639.1 rRNA maturation RNase YbeY -
  ALANTH_RS05220 (ALANTH_1045) radA 1045612..1046961 (-) 1350 WP_026804262.1 DNA repair protein RadA Machinery gene
  ALANTH_RS05225 (ALANTH_1046) - 1047078..1047638 (+) 561 WP_026807640.1 YqiA/YcfP family alpha/beta fold hydrolase -
  ALANTH_RS05230 (ALANTH_1047) - 1047701..1048615 (+) 915 WP_026804264.1 cytochrome-c peroxidase -
  ALANTH_RS05235 (ALANTH_1048) - 1048599..1050305 (+) 1707 WP_034236782.1 diguanylate cyclase domain-containing protein -
  ALANTH_RS05240 (ALANTH_1049) - 1050314..1051180 (-) 867 WP_026807641.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49441.04 Da        Isoelectric Point: 6.1942

>NTDB_id=448057 ALANTH_RS05220 WP_026804262.1 1045612..1046961(-) (radA) [Aliarcobacter lanthieri strain LMG 28516]
MAKKKITLFECQHCGEQSTKWLGKCPNCGSWDSFIELNQEQQEILKQSIKVSSSTSKAKPITEILQDDVTRFSSFNYEFD
LVLGGGIVPGSLTLIGGSPGVGKSTLLLKVAGSIANSGKKVLYVSGEESAGQIKLRANRLEANSENLFLLSEIKLEEILD
ELLRIDYEVCIIDSIQTIYSSNLTSAPGSVSQVREITFELMRKAKESNLAMFIIGHITKDGSIAGPRVLEHMVDTVLYFE
GEASRELRMLRGFKNRFGSTSEIGIFEMTSEGLISAKDIASKFFDKNKSQSGSSLTVSMEGSRAIILEVQALVCETTFPN
PKRSATGFDTNRLTMLLALLEKKLDLPFNHYDVFINISGGIKIKESSADLAVIAAIISSFRDRPISKESVFIGEVSLTGE
IKEVYSIDLRLKEAQAQGIKKAIIAQKINLKLDLKTFAVDEVSKMIELF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=448057 ALANTH_RS05220 WP_026804262.1 1045612..1046961(-) (radA) [Aliarcobacter lanthieri strain LMG 28516]
ATGGCAAAAAAGAAAATTACACTTTTTGAGTGTCAACATTGTGGAGAACAATCTACAAAATGGCTTGGTAAATGTCCAAA
TTGTGGTTCTTGGGATAGCTTTATAGAATTAAATCAAGAGCAGCAAGAAATTCTAAAACAATCTATAAAAGTTTCTAGTT
CTACTTCAAAAGCAAAACCAATTACAGAAATTTTACAAGATGATGTTACAAGATTTTCATCTTTCAACTATGAATTTGAT
TTAGTTTTAGGTGGAGGGATAGTTCCAGGAAGCCTTACTTTAATAGGAGGAAGTCCAGGAGTTGGTAAATCTACACTTTT
ATTGAAAGTTGCAGGAAGCATTGCAAATAGTGGTAAAAAAGTTCTTTATGTTTCAGGAGAAGAAAGTGCAGGACAGATAA
AATTAAGAGCAAATAGACTTGAAGCAAATAGTGAAAATCTATTTTTATTAAGCGAAATAAAACTTGAAGAAATTTTAGAT
GAACTTCTTAGAATTGATTATGAAGTTTGTATTATTGATTCTATTCAAACAATATATTCTTCAAATCTTACATCAGCACC
AGGAAGTGTATCTCAAGTTAGAGAAATAACATTTGAACTTATGAGAAAAGCAAAAGAATCAAATCTTGCTATGTTTATTA
TTGGGCATATTACAAAAGATGGAAGTATTGCAGGACCTAGAGTTTTAGAACATATGGTTGATACAGTTTTATATTTTGAA
GGAGAAGCAAGTCGTGAATTAAGAATGCTTCGTGGATTTAAAAATAGATTTGGAAGTACAAGTGAAATTGGTATTTTTGA
AATGACATCAGAAGGCTTAATAAGTGCAAAAGATATCGCTTCAAAATTTTTTGATAAAAATAAATCTCAAAGTGGATCAA
GTTTAACTGTAAGTATGGAAGGAAGTCGTGCGATAATACTGGAAGTTCAAGCATTAGTTTGTGAAACAACATTTCCAAAT
CCAAAAAGAAGTGCAACAGGATTTGATACAAACCGTTTAACTATGCTTTTAGCACTTTTAGAAAAAAAATTGGATTTACC
TTTTAATCACTACGATGTTTTTATAAATATTAGTGGAGGTATAAAAATAAAAGAAAGTAGTGCTGATTTAGCTGTAATTG
CTGCAATAATATCTAGTTTTAGAGATAGGCCAATTTCAAAAGAATCTGTTTTTATAGGTGAAGTGAGTCTAACAGGAGAA
ATAAAAGAAGTTTATTCTATTGATTTAAGACTAAAAGAGGCTCAAGCACAAGGTATAAAAAAAGCAATAATTGCTCAAAA
AATCAATTTAAAACTAGATTTAAAAACTTTTGCAGTAGATGAAGTCTCAAAGATGATTGAACTATTTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(344-426)

AAA domain (AAA_25)

(82-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

47.797

100

0.483
  radA Streptococcus pneumoniae Rx1

47.797

100

0.483
  radA Streptococcus pneumoniae D39

47.797

100

0.483
  radA Streptococcus pneumoniae TIGR4

47.797

100

0.483
  radA Streptococcus mitis SK321

47.577

100

0.481
  radA Streptococcus mitis NCTC 12261

49.883

95.546

0.477
  radA Bacillus subtilis subsp. subtilis str. 168

49.535

95.768

0.474