Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ADFLV_RS04705 Genome accession   NZ_CP053835
Coordinates   931163..933013 (-) Length   616 a.a.
NCBI ID   WP_014473719.1    Uniprot ID   A0AAE7BCP7
Organism   Arcobacter defluvii strain LMG 25694     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 926163..938013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ADFLV_RS04680 (ADFLV_0933) - 927368..928009 (-) 642 WP_014473714.1 adenylate kinase -
  ADFLV_RS04685 (ADFLV_0934) - 928141..928710 (+) 570 WP_014473715.1 adenylate kinase -
  ADFLV_RS04690 (ADFLV_0935) - 928710..929471 (+) 762 WP_129010923.1 molybdopterin-binding protein -
  ADFLV_RS04695 (ADFLV_0936) - 929473..930141 (-) 669 WP_129010922.1 tetratricopeptide repeat protein -
  ADFLV_RS04700 (ADFLV_0937) - 930138..931160 (-) 1023 WP_129010921.1 alanine racemase -
  ADFLV_RS04705 (ADFLV_0938) uvrC 931163..933013 (-) 1851 WP_014473719.1 excinuclease ABC subunit UvrC Machinery gene
  ADFLV_RS04710 (ADFLV_0939) - 933131..933775 (+) 645 WP_014473720.1 N-acetyltransferase -
  ADFLV_RS04715 (ADFLV_0940) - 933759..935054 (-) 1296 WP_164968495.1 diguanylate cyclase -
  ADFLV_RS04720 (ADFLV_0941) - 935128..935874 (-) 747 WP_129010919.1 choline/ethanolamine kinase family protein -
  ADFLV_RS04725 (ADFLV_0942) pnuC 935864..936421 (-) 558 WP_228712373.1 nicotinamide riboside transporter PnuC -
  ADFLV_RS04730 (ADFLV_0943) - 936490..936966 (-) 477 WP_014473724.1 glutathione peroxidase -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 72150.43 Da        Isoelectric Point: 9.2606

>NTDB_id=448032 ADFLV_RS04705 WP_014473719.1 931163..933013(-) (uvrC) [Arcobacter defluvii strain LMG 25694]
MNLHEKLKQLPNDSGVYQYFDKDGHLLYIGKAKVLKNRVKSYFKFVPKLQPADKLSPRIYKMISEVEALEWIVVPNEHDA
LILENSLIKQLKPKYNILLRDDKTYPYIFIDYNEDFPRLEITRKIHKSKNIKYFGPYSTGAKDMLDSIYEIVPLVQKKSC
VKGKKACLFHQIQKCYAPCENKISKDDYAKIVENALEFIYNKTKLISKLNEKMLQYSNDFRFEEAMTLRDRIKTIEKSQI
KTGIDLATNEDIDIFVITTNNKKAVIVRMFLRDGKLTSSSHDFLKIDNFTQEFDFDYEEAYKRAIINYYDNEIPLLPKEI
LVGCELEETKEIEEFLYTRFNKKIKIINPKKDKKKDIVQIAFNNCDELLRLESSKNQTSIYEDLKELFTLQTLPYIIESF
DNSHMMGQATVGAMIVWNETLNSFDKKAFRHYNLESKDEYSQMREMLIRRVESFEKNPAPDLWIIDGGETLLKLAYDIVQ
SVGVNLDIIAIAKEKLDAKAHRAKGAAKDIIHYKNKNGEFKSFNLLTSDKRLQFVQRQRDEAHRFAITFHKKQKRAQDKQ
ISLLQIKGIGEAKIKKLLLYFGEFEKIKNASLEELKNVLNEKDANTILNYFIASKD

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=448032 ADFLV_RS04705 WP_014473719.1 931163..933013(-) (uvrC) [Arcobacter defluvii strain LMG 25694]
ATGAATTTACATGAGAAACTAAAACAACTTCCTAATGATTCGGGAGTTTATCAATACTTTGATAAAGATGGTCATTTACT
TTATATTGGAAAAGCAAAAGTTCTAAAAAATAGAGTTAAGTCATATTTTAAATTTGTGCCAAAACTACAACCAGCAGATA
AACTAAGTCCAAGAATTTATAAAATGATTAGCGAAGTTGAAGCTCTTGAGTGGATTGTTGTACCAAATGAACATGATGCA
CTTATTTTAGAAAATTCATTAATCAAGCAATTAAAACCAAAATATAATATTTTACTTCGTGATGATAAAACATATCCATA
TATTTTTATTGATTACAATGAAGATTTTCCAAGACTTGAAATCACAAGAAAAATACATAAAAGCAAAAATATAAAATATT
TTGGACCTTATTCAACAGGTGCAAAAGATATGCTTGATAGCATTTATGAGATTGTTCCATTAGTTCAAAAAAAATCTTGT
GTAAAAGGTAAAAAAGCTTGTCTATTTCATCAAATACAAAAATGTTATGCTCCGTGCGAAAATAAGATTTCAAAAGATGA
TTATGCAAAAATAGTAGAAAATGCCTTAGAATTTATCTATAATAAAACAAAACTCATTTCTAAACTAAATGAAAAAATGC
TTCAATATTCAAATGATTTTAGATTTGAAGAGGCAATGACTTTAAGAGATAGAATCAAAACTATTGAAAAATCACAAATA
AAAACTGGAATTGATTTAGCTACAAATGAAGATATTGATATTTTCGTAATAACTACAAACAATAAAAAAGCAGTAATTGT
ACGAATGTTTTTAAGAGATGGAAAATTAACTTCATCAAGTCATGACTTTTTAAAAATTGATAATTTTACACAAGAGTTTG
ATTTTGATTATGAAGAGGCTTATAAAAGAGCTATTATAAACTATTATGACAATGAAATTCCTCTTTTACCAAAAGAGATT
TTAGTTGGATGTGAATTAGAAGAAACAAAAGAGATTGAAGAATTTTTATATACAAGATTTAATAAAAAGATAAAAATTAT
AAATCCTAAAAAAGATAAGAAAAAAGATATTGTTCAAATTGCCTTTAATAACTGTGATGAACTTTTAAGACTAGAATCAT
CAAAAAATCAAACTTCTATTTATGAGGATTTAAAAGAGTTATTTACTCTTCAAACTCTTCCATATATAATTGAAAGTTTT
GATAACTCTCATATGATGGGACAAGCAACTGTTGGAGCTATGATAGTTTGGAATGAAACTTTAAACTCTTTTGATAAAAA
AGCTTTTAGACACTATAATCTTGAATCAAAAGACGAATACTCTCAAATGAGAGAAATGTTAATAAGAAGAGTTGAAAGTT
TTGAAAAAAATCCGGCACCTGATTTGTGGATAATAGATGGTGGAGAAACTCTTTTGAAACTGGCATATGACATAGTACAA
TCTGTTGGAGTTAATCTTGATATTATTGCAATTGCAAAAGAAAAACTTGATGCAAAAGCTCACAGAGCAAAAGGTGCAGC
AAAAGATATAATTCATTATAAAAATAAAAATGGTGAATTTAAAAGTTTTAACTTATTAACAAGTGATAAAAGATTACAAT
TCGTTCAAAGACAAAGGGATGAAGCTCACAGATTTGCTATAACATTCCATAAAAAACAGAAAAGAGCCCAAGATAAACAA
ATTTCTTTATTACAAATCAAAGGAATTGGTGAAGCAAAAATCAAAAAGCTTCTTTTATATTTTGGAGAATTTGAAAAAAT
AAAAAATGCATCTTTAGAAGAATTAAAAAATGTATTAAATGAAAAAGATGCAAATACAATTTTAAATTATTTTATAGCCT
CAAAGGATTAA

Domains

Predicted by InterproScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(385-547)

GIY-YIG catalytic domain (GIY-YIG)

(15-96)

UvrB/uvrC motif (UVR)

(204-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

51.741

97.89

0.506