Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ACLO_RS09420 Genome accession   NZ_CP053833
Coordinates   1867967..1869817 (+) Length   616 a.a.
NCBI ID   WP_129014001.1    Uniprot ID   A0A6M8NMD2
Organism   Arcobacter cloacae strain LMG 26153     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1862967..1874817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLO_RS09395 (ACLO_1872) - 1863036..1864484 (-) 1449 Protein_1844 methyl-accepting chemotaxis protein -
  ACLO_RS09400 (ACLO_1873) - 1864711..1865187 (+) 477 WP_129014005.1 glutathione peroxidase -
  ACLO_RS09405 (ACLO_1874) pnuC 1865239..1865811 (+) 573 WP_129014004.1 nicotinamide riboside transporter PnuC -
  ACLO_RS09410 (ACLO_1875) - 1865801..1866556 (+) 756 WP_129014003.1 choline/ethanolamine kinase family protein -
  ACLO_RS09415 (ACLO_1876) - 1866641..1867936 (+) 1296 WP_129014002.1 diguanylate cyclase -
  ACLO_RS09420 (ACLO_1877) uvrC 1867967..1869817 (+) 1851 WP_129014001.1 excinuclease ABC subunit UvrC Machinery gene
  ACLO_RS09425 (ACLO_1878) - 1869820..1870842 (+) 1023 WP_129014000.1 alanine racemase -
  ACLO_RS09430 (ACLO_1879) - 1870839..1871507 (+) 669 WP_129013999.1 tetratricopeptide repeat protein -
  ACLO_RS09435 (ACLO_1880) - 1871539..1872195 (-) 657 WP_129013998.1 CoA pyrophosphatase -
  ACLO_RS09440 (ACLO_1881) bioA 1872198..1873463 (-) 1266 WP_129013997.1 adenosylmethionine--8-amino-7-oxononanoate transaminase -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 72058.35 Da        Isoelectric Point: 9.0908

>NTDB_id=448025 ACLO_RS09420 WP_129014001.1 1867967..1869817(+) (uvrC) [Arcobacter cloacae strain LMG 26153]
MNLLEKLKQLPQDAGVYQYFDKNGHLLYIGKAKVLKNRVKSYFKFTPKLLPSDKLGPRIYKMISEVVSLEWIVVPNEHDA
LILENSLIKQLKPKYNILLRDDKTYPYIFIDYNEDFPRLEITRRVYKEKNIKYFGPYSSGAKDMLDSIYEIVPLVQKKSC
VKSKTACLFHQIQKCLAPCENKISKEEYAKIVENALEYIYNKTKLLSKLNEKMIQYSNDFRFEEAMTLRDRIKTIEKSQI
KSGIDLATNEDIDIFAITASNKKAVVVRMFLRDGKLTSSSHDFLKVDNYEEEFEFDYEEAYKRAIINYYDNEIPLLPKEI
LIGIELDDTAELEEFLQIRFNKKIKIINPKKDKKKDIVQIALSNCDELLRIDSSKNQTNIYEELKELFNLQTLPFRIESF
DNSHMMGQATVGAMIVWSEELNAFDKKAFRHYNLESKDEYSQMREMLIRRVESFPKNPAPDLWIIDGGETLLKLAYDIVL
SVGVNLDIIAIAKEKVDAKAHRAKGAAKDIVHYKDKNGEFKNFRLSTSDKRLQFVQRQRDEAHRFVINFHKKQKRTQDKQ
ISLLQIKGIGEAKIKKLLLYFGEFEKIKTASIEELKNVLNEKDAITILNYFTESKD

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=448025 ACLO_RS09420 WP_129014001.1 1867967..1869817(+) (uvrC) [Arcobacter cloacae strain LMG 26153]
ATGAATCTACTTGAAAAACTAAAACAACTCCCACAAGATGCAGGAGTTTATCAATACTTTGACAAAAATGGACATCTTCT
TTATATTGGAAAAGCAAAAGTTCTAAAAAATAGAGTTAAATCTTATTTTAAATTTACTCCAAAACTTCTTCCTTCTGATA
AGTTAGGTCCACGAATTTATAAAATGATTAGTGAAGTTGTAAGTTTAGAATGGATTGTTGTTCCAAATGAACATGATGCT
TTAATTTTAGAAAACTCTTTAATCAAACAGTTAAAACCGAAATATAATATTTTACTTCGTGATGATAAAACCTATCCATA
TATTTTTATAGATTATAATGAAGATTTCCCAAGACTTGAAATTACAAGAAGAGTATATAAAGAAAAAAATATAAAATATT
TTGGACCATATTCAAGTGGTGCAAAAGATATGCTTGATAGTATTTATGAAATAGTTCCATTGGTACAAAAAAAATCTTGT
GTTAAAAGCAAAACAGCCTGTTTATTCCATCAAATACAAAAATGCCTTGCTCCTTGTGAAAATAAAATTTCAAAAGAAGA
GTACGCAAAAATTGTAGAAAATGCCCTAGAATATATCTATAATAAGACAAAACTTCTTTCAAAACTAAATGAAAAAATGA
TTCAATACTCAAATGATTTTAGATTTGAAGAAGCAATGACATTAAGGGATAGAATAAAAACCATAGAAAAATCTCAAATA
AAATCAGGAATAGATTTAGCAACAAATGAAGATATAGATATTTTTGCAATAACAGCCTCAAATAAAAAAGCTGTTGTTGT
ACGAATGTTTTTAAGAGATGGGAAATTAACCTCGTCAAGCCATGATTTTTTAAAGGTTGATAATTACGAAGAAGAGTTTG
AGTTTGATTATGAAGAAGCTTATAAAAGAGCAATTATAAACTACTATGACAATGAAATCCCTCTTTTACCAAAAGAGATT
TTAATAGGAATCGAACTAGATGATACAGCTGAACTTGAAGAGTTTTTACAAATAAGATTTAATAAAAAAATCAAAATTAT
AAATCCTAAAAAAGATAAGAAAAAAGATATTGTTCAAATTGCTCTTAGCAACTGCGATGAACTTTTACGAATTGATTCAA
GTAAAAATCAAACAAATATTTATGAAGAGTTAAAAGAGTTATTTAATCTTCAAACACTACCTTTTAGAATTGAAAGCTTT
GATAATTCTCATATGATGGGACAAGCAACTGTTGGAGCCATGATTGTATGGAGTGAAGAGTTAAATGCTTTTGATAAAAA
AGCTTTTAGACACTATAATCTTGAATCAAAAGATGAATACTCTCAAATGAGAGAGATGTTAATACGAAGAGTTGAAAGTT
TTCCCAAAAATCCAGCTCCTGATTTATGGATTATTGATGGAGGAGAGACACTTTTAAAACTTGCCTATGATATTGTGTTA
TCAGTTGGTGTAAATCTTGATATAATAGCAATCGCAAAAGAGAAAGTTGATGCCAAAGCCCATAGGGCAAAAGGTGCGGC
TAAAGATATAGTTCATTACAAAGACAAAAATGGTGAATTTAAAAACTTTAGATTATCAACTAGCGATAAAAGATTGCAAT
TTGTTCAAAGACAACGTGATGAAGCACATAGATTTGTAATAAATTTCCATAAAAAACAAAAAAGAACTCAAGATAAACAA
ATCTCACTTTTACAAATCAAAGGTATAGGTGAAGCAAAAATCAAAAAACTTCTTTTATATTTTGGAGAGTTTGAAAAGAT
AAAAACAGCTTCTATTGAAGAGTTAAAAAATGTCTTAAATGAAAAAGACGCAATTACGATATTAAATTATTTTACAGAAT
CAAAGGATTAG

Domains

Predicted by InterproScan.

GIY-YIG catalytic domain (GIY-YIG)

(15-96)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(385-547)

UvrB/uvrC motif (UVR)

(204-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M8NMD2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

50.912

97.89

0.498