Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CURT_RS06800 Genome accession   NZ_CP053832
Coordinates   1340635..1341975 (+) Length   446 a.a.
NCBI ID   WP_018712673.1    Uniprot ID   A0AAE7EAU7
Organism   Campylobacter ureolyticus strain LMG 6451     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1335635..1346975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CURT_RS06770 (CURT_1308) - 1335855..1336418 (-) 564 WP_018712667.1 DedA family protein -
  CURT_RS06775 (CURT_1309) - 1336418..1337008 (-) 591 WP_018712668.1 lipid-binding SYLF domain-containing protein -
  CURT_RS06780 (CURT_1310) rny 1337018..1338571 (-) 1554 WP_026320300.1 ribonuclease Y -
  CURT_RS06785 (CURT_1311) - 1338504..1339124 (-) 621 WP_026320301.1 5-formyltetrahydrofolate cyclo-ligase -
  CURT_RS06790 (CURT_1312) - 1339191..1339769 (+) 579 WP_018712671.1 thioredoxin family protein -
  CURT_RS06795 (CURT_1313) ftsY 1339766..1340635 (+) 870 WP_018712672.1 signal recognition particle-docking protein FtsY -
  CURT_RS06800 (CURT_1314) radA 1340635..1341975 (+) 1341 WP_018712673.1 DNA repair protein RadA Machinery gene
  CURT_RS06805 (CURT_1315) - 1342022..1343086 (+) 1065 WP_018712674.1 diguanylate cyclase domain-containing protein -
  CURT_RS06810 (CURT_1316) - 1343256..1343693 (-) 438 WP_018712675.1 DNA starvation/stationary phase protection protein -
  CURT_RS06815 (CURT_1317) - 1343790..1344998 (-) 1209 WP_018712676.1 glucose-6-phosphate isomerase -
  CURT_RS06820 (CURT_1318) galU 1344985..1345833 (-) 849 WP_018712677.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  CURT_RS06825 (CURT_1319) - 1345986..1346246 (+) 261 WP_018712678.1 heavy-metal-associated domain-containing protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49087.10 Da        Isoelectric Point: 7.5835

>NTDB_id=448014 CURT_RS06800 WP_018712673.1 1340635..1341975(+) (radA) [Campylobacter ureolyticus strain LMG 6451]
MAKKKTVFECSACGNKQAKWMGKCPECGAWDSFVELSEEQIKFIETSSKIITTPNKAQEICDIKIEDVKRVSTEDKELDL
VLGGGIVEGSLVLIGGSPGIGKSTLLLKIASNLAKKSLKVLYVSGEESLSQIKLRADRLNAVSKNLYLLAEISLENIKNE
LLQNEYKFLVIDSIQTLYSDAITSAPGSVSQVREITFELMRIAKEKGISVFIIGHITKEGSIAGPRVLEHMVDVVLYFEG
DASKELRVLRGFKNRFGSTSEVGIFEMSDKGLISAKDVASKFFTRGSAVSGSAITVIMEGSRPLIVEIQALVCESSYPKR
SSTGYDKNRLDMIIALLDRKMEILLGHYDVFINVIGGVKISETAADLAVVAAIVSSFKNRPISKESIFLGEVSLNGEIRD
ISNLDLRVKEAKMQNFRNVIAPSLPIEEKGIKIFQTKEIRQILDMM

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=448014 CURT_RS06800 WP_018712673.1 1340635..1341975(+) (radA) [Campylobacter ureolyticus strain LMG 6451]
ATGGCTAAAAAAAAGACAGTTTTTGAATGTAGTGCATGTGGAAACAAACAAGCTAAATGGATGGGAAAATGTCCTGAATG
TGGTGCTTGGGATAGTTTTGTTGAACTAAGTGAAGAACAAATTAAATTTATAGAAACTTCTTCAAAAATAATAACTACTC
CAAATAAAGCACAAGAAATTTGTGATATAAAAATAGAAGATGTTAAAAGAGTCTCAACAGAGGATAAAGAGCTTGATTTA
GTTTTAGGTGGCGGGATAGTAGAAGGCTCACTTGTGCTAATTGGTGGAAGCCCTGGGATTGGCAAATCAACGCTTTTACT
AAAAATAGCTTCAAATTTGGCAAAAAAATCCTTAAAAGTTCTTTATGTAAGTGGAGAAGAAAGCCTTAGTCAAATAAAAC
TAAGAGCCGATAGGCTAAATGCTGTTTCAAAAAATTTATATCTTTTGGCTGAAATTTCACTTGAAAATATTAAAAATGAA
CTTTTACAAAATGAGTATAAATTTCTAGTTATAGATAGTATCCAAACTCTTTATAGTGACGCTATAACCTCAGCTCCAGG
ATCTGTTTCACAAGTAAGAGAAATAACATTTGAGTTAATGCGAATAGCTAAAGAAAAAGGAATTTCTGTTTTTATCATAG
GTCATATCACAAAAGAAGGCTCAATTGCAGGTCCTAGAGTGCTTGAACACATGGTTGATGTGGTGCTTTACTTTGAAGGA
GATGCTAGTAAAGAGCTAAGAGTTTTAAGAGGATTTAAAAACCGTTTTGGCTCAACAAGTGAAGTTGGCATATTTGAAAT
GAGTGATAAAGGCTTAATAAGCGCAAAAGATGTAGCAAGTAAATTTTTTACAAGAGGCTCTGCTGTGAGTGGAAGCGCAA
TAACAGTTATAATGGAAGGTTCTCGCCCATTAATAGTAGAAATTCAAGCCCTAGTTTGTGAAAGCTCATATCCAAAAAGA
AGTTCAACTGGATATGACAAAAACAGACTTGATATGATAATAGCCTTGCTTGATAGAAAAATGGAAATTTTACTTGGACA
TTATGATGTTTTTATAAATGTAATTGGCGGTGTTAAGATAAGCGAAACTGCTGCTGATTTAGCTGTAGTTGCGGCAATTG
TAAGCAGTTTTAAAAATCGCCCGATTAGCAAAGAAAGTATATTTTTAGGAGAAGTTAGCTTAAATGGTGAAATTCGTGAT
ATTTCAAACCTAGATCTTAGAGTAAAAGAAGCAAAAATGCAAAATTTTAGAAATGTCATAGCCCCATCTTTACCAATTGA
AGAAAAAGGAATAAAAATATTTCAAACAAAAGAAATAAGGCAAATTTTAGATATGATGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(351-422)

AAA domain (AAA_25)

(66-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.791

100

0.498
  radA Streptococcus pneumoniae Rx1

46.171

100

0.473
  radA Streptococcus pneumoniae D39

46.171

100

0.473
  radA Streptococcus pneumoniae R6

46.171

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.171

100

0.473
  radA Streptococcus mitis NCTC 12261

47.786

96.188

0.46
  radA Streptococcus mitis SK321

47.786

96.188

0.46