Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CMCT_RS01290 Genome accession   NZ_CP053831
Coordinates   246071..246994 (+) Length   307 a.a.
NCBI ID   WP_034969074.1    Uniprot ID   -
Organism   Campylobacter mucosalis strain ATCC 43264     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 241071..251994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMCT_RS01265 (CMCT_0251) - 241951..243282 (-) 1332 WP_034969068.1 HAMP domain-containing sensor histidine kinase -
  CMCT_RS01270 (CMCT_0252) - 243266..243925 (-) 660 WP_034969070.1 response regulator transcription factor -
  CMCT_RS01275 (CMCT_0253) - 243965..244441 (-) 477 WP_051654892.1 hypothetical protein -
  CMCT_RS01280 (CMCT_0254) - 244438..244917 (-) 480 WP_034969072.1 PepSY domain-containing protein -
  CMCT_RS01285 (CMCT_0255) - 245058..246074 (+) 1017 WP_176324977.1 glycosyltransferase family 4 protein -
  CMCT_RS01290 (CMCT_0256) waaF 246071..246994 (+) 924 WP_034969074.1 lipopolysaccharide heptosyltransferase II Regulator
  CMCT_RS01295 (CMCT_0257) modB 246991..247650 (-) 660 WP_034969077.1 molybdate ABC transporter permease subunit -
  CMCT_RS01300 (CMCT_0258) - 247647..248516 (-) 870 WP_034969078.1 ABC transporter ATP-binding protein -
  CMCT_RS01305 (CMCT_0259) - 248503..248898 (-) 396 WP_034969081.1 TOBE domain-containing protein -
  CMCT_RS01310 (CMCT_0260) modA 248898..249638 (-) 741 WP_034969082.1 molybdate ABC transporter substrate-binding protein -
  CMCT_RS01315 (CMCT_0261) - 249640..250425 (-) 786 WP_034969085.1 TOBE domain-containing protein -
  CMCT_RS01320 (CMCT_0262) - 250571..251257 (+) 687 WP_034969086.1 VacJ family lipoprotein -
  CMCT_RS01325 (CMCT_0263) - 251259..251849 (+) 591 WP_034969088.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34673.02 Da        Isoelectric Point: 9.9501

>NTDB_id=447995 CMCT_RS01290 WP_034969074.1 246071..246994(+) (waaF) [Campylobacter mucosalis strain ATCC 43264]
MRIFIELPTWLGDCVMATPAIESITKKHKNAKFVFFGSFVSTQLLKTHKNCEFVVVDESKKAKNRLFYLYKMVKNLGKFD
LAISFRSSLISSFLLKMLSKNSFKFKKMQEQKHQVLKYLDFIKSALKIDETCDNLKLNFTPKPLKNAIGLNPGATYGSAK
RWYPEYFANVAMSLGEREIFIFGGQNESEICAKIAEILSQNGVKFTNLCGQTGIKELCEYIGGLGLFITNDSGPMHIAAA
FKVPTIALFGPTKWAETSPWGNPNARILRLNLACMPCMKRVCPLKTHECMKNLTPKMVLDEIKKCGF

Nucleotide


Download         Length: 924 bp        

>NTDB_id=447995 CMCT_RS01290 WP_034969074.1 246071..246994(+) (waaF) [Campylobacter mucosalis strain ATCC 43264]
ATGAGAATTTTTATAGAGCTGCCCACTTGGCTTGGAGATTGCGTTATGGCGACCCCAGCGATTGAGAGTATTACAAAAAA
ACATAAAAACGCTAAGTTTGTTTTTTTTGGCTCGTTTGTAAGCACACAGCTTCTTAAAACGCATAAAAACTGCGAATTTG
TTGTCGTTGATGAGAGTAAAAAGGCAAAAAATCGCTTGTTTTATCTATATAAAATGGTAAAAAATTTAGGAAAGTTTGAC
CTTGCCATTAGCTTTCGTAGCTCGCTAATAAGCTCGTTTTTACTAAAAATGCTAAGCAAAAATAGCTTTAAATTTAAAAA
GATGCAAGAGCAAAAACATCAGGTGTTAAAATATCTTGATTTTATAAAATCGGCTTTAAAAATTGATGAGACGTGTGATA
ATTTAAAGCTAAATTTCACACCAAAACCGCTAAAAAACGCTATCGGGTTAAATCCTGGTGCAACTTACGGGTCTGCAAAA
AGGTGGTATCCAGAGTATTTTGCTAATGTTGCAATGTCGCTTGGTGAGCGTGAAATTTTCATCTTTGGCGGTCAAAATGA
GAGTGAAATTTGTGCTAAAATCGCAGAAATTTTAAGCCAAAATGGGGTTAAATTTACAAATCTTTGCGGACAAACCGGCA
TTAAAGAGCTTTGTGAATATATCGGCGGTCTTGGACTTTTTATCACAAATGATAGCGGTCCTATGCACATAGCAGCCGCC
TTTAAAGTGCCTACAATCGCACTTTTTGGCCCGACAAAATGGGCTGAAACCAGCCCTTGGGGCAACCCAAACGCTAGGAT
TTTACGCCTAAATTTAGCCTGTATGCCCTGTATGAAGCGTGTTTGCCCCCTAAAAACGCACGAGTGTATGAAAAATCTAA
CGCCAAAAATGGTGCTTGATGAGATAAAAAAGTGCGGATTTTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(126-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.937

100

0.492