Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   STCNRZ1151_RS02380 Genome accession   NZ_CP065483
Coordinates   435960..437765 (+) Length   601 a.a.
NCBI ID   WP_011226924.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CNRZ1151     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 430960..442765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ1151_RS02370 (STCNRZ1151_02340) - 432796..433692 (-) 897 WP_002948119.1 LysR family transcriptional regulator -
  STCNRZ1151_RS02375 (STCNRZ1151_02345) coiA 434990..435949 (+) 960 WP_011680817.1 competence protein CoiA Machinery gene
  STCNRZ1151_RS02380 (STCNRZ1151_02350) pepF 435960..437765 (+) 1806 WP_011226924.1 oligoendopeptidase F Regulator
  STCNRZ1151_RS02385 (STCNRZ1151_02355) - 437949..438656 (+) 708 WP_002946027.1 O-methyltransferase -
  STCNRZ1151_RS02390 (STCNRZ1151_02360) - 438718..439833 (+) 1116 WP_011225573.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69238.47 Da        Isoelectric Point: 4.5883

>NTDB_id=447995 STCNRZ1151_RS02380 WP_011226924.1 435960..437765(+) (pepF) [Streptococcus thermophilus strain CNRZ1151]
MSDNRCHLEEKYTWDLTTIFATDADWETEYESIVQDLKKASSFAGHLLDSAKNLLEATELYMSLMRRLEKIYVYASMKND
QDTTVGLYQEYNAKASNLYSQLSEAFAYFEPEFMALEAEKLVSFKEQEPGLGLYDHYFERLLANKDHVLSQEAEELLAAA
GDIFNGPTDTFNVLDNADILFPWVSDGQGDVIELTHGNFITLMESKNREVRKGAYEAMYRTYEQFQHTYAQTLQGVVKVH
NYMAKVRHYNSARHAALAANFIPESVYDSLLESVNKHLPLLHRYLDLRKKVLELDKLKMYDVYAPLSETETALTYEEALK
KAEEVLAIFGEEYSKEVHAAFTERWIDVHPNKGKRSGAYSGGAYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTRQT
QPYVYGDYPIFLAEIASTTNENILTETLLKEVNDDKTRFAILNHYLDGFKGTVFRQTQFAEFEHAIHEADASGQILTADF
MNKLYADLNEKYYNLKAEDNYEIQFEWERIPHFYMNYYVYQYATGFAAASYLAEKIVHGNEEDKEAYLTYLKAGSSDYPL
EVIKKAGVDMTNTDYLDAAFKVFEDRLVELEALVEKGVHLS

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=447995 STCNRZ1151_RS02380 WP_011226924.1 435960..437765(+) (pepF) [Streptococcus thermophilus strain CNRZ1151]
ATGTCAGACAATCGTTGTCATTTAGAAGAAAAATATACATGGGATTTGACTACCATTTTTGCGACAGACGCTGATTGGGA
GACTGAATATGAAAGCATTGTTCAGGATTTGAAGAAGGCTAGTTCCTTTGCTGGTCACCTCTTGGACTCAGCCAAGAATT
TGCTTGAGGCAACAGAACTTTATATGAGTTTGATGCGTCGTTTGGAAAAAATCTACGTTTATGCGTCAATGAAAAATGAC
CAAGATACAACGGTAGGTCTTTACCAAGAGTACAATGCCAAAGCCTCAAACCTATACTCACAGTTGAGTGAAGCCTTTGC
CTACTTTGAGCCTGAATTTATGGCTTTGGAAGCTGAAAAATTAGTATCCTTCAAAGAACAAGAGCCAGGTCTTGGACTTT
ATGACCACTATTTCGAACGTCTTTTGGCAAACAAAGACCACGTTCTTTCTCAAGAAGCAGAAGAACTCTTGGCAGCAGCT
GGTGATATTTTTAACGGTCCAACGGATACCTTCAACGTCTTGGATAATGCTGATATCCTCTTTCCATGGGTATCGGATGG
TCAAGGGGATGTGATTGAGTTGACACATGGTAACTTTATCACCCTCATGGAATCTAAGAATCGTGAAGTCCGTAAGGGAG
CCTATGAAGCTATGTATAGAACTTATGAGCAGTTCCAACATACCTATGCACAAACACTTCAAGGCGTTGTCAAGGTTCAC
AATTATATGGCTAAAGTTCGTCACTATAATTCGGCACGTCATGCAGCACTTGCAGCTAACTTTATTCCAGAAAGTGTTTA
CGACTCACTCTTAGAATCAGTGAATAAGCATTTGCCACTTTTGCACCGTTACCTTGATTTGCGTAAGAAGGTGTTGGAAC
TTGATAAGCTTAAGATGTATGATGTTTATGCACCACTTTCTGAGACAGAGACTGCTCTTACTTATGAAGAAGCCCTCAAG
AAAGCAGAGGAAGTCTTGGCTATCTTTGGTGAGGAGTATAGTAAAGAGGTTCATGCAGCCTTTACGGAACGTTGGATTGA
TGTTCACCCTAACAAAGGGAAACGTTCAGGTGCCTACTCAGGTGGTGCCTATGATACCAATGCTTTCATGCTTTTGAACT
GGCAAGACACTTTGGACAATCTCTTTACCTTGGTTCACGAGACTGGCCACAGTTTGCATTCAACTTTCACACGTCAGACA
CAACCATATGTTTACGGAGATTACCCAATCTTCTTGGCTGAAATTGCGTCTACAACTAATGAAAATATCTTGACAGAAAC
ACTTCTTAAAGAAGTTAACGATGATAAGACACGTTTTGCTATCCTTAACCACTATTTAGATGGATTTAAGGGAACCGTCT
TCCGTCAAACGCAATTTGCCGAGTTTGAGCATGCTATCCATGAAGCGGATGCATCGGGTCAAATCTTGACAGCAGACTTC
ATGAATAAGCTTTATGCAGACCTCAATGAGAAATACTATAACCTTAAAGCTGAAGATAACTATGAAATTCAGTTTGAGTG
GGAACGTATTCCGCATTTCTACATGAATTACTATGTTTATCAATATGCTACAGGATTTGCAGCAGCAAGCTACTTGGCAG
AAAAGATTGTTCACGGTAATGAAGAAGATAAAGAAGCTTACCTTACGTACCTTAAGGCAGGTAGCTCAGACTATCCTTTG
GAAGTCATCAAGAAAGCTGGTGTTGACATGACCAACACTGACTACTTGGATGCAGCTTTCAAGGTTTTCGAAGACCGCTT
AGTTGAATTGGAAGCCTTGGTTGAAAAAGGTGTTCATCTTTCTTAA

Domains

Predicted by InterProScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

96.007

100

0.96