Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CLLT_RS06195 Genome accession   NZ_CP053830
Coordinates   1179401..1180321 (-) Length   306 a.a.
NCBI ID   WP_074692658.1    Uniprot ID   -
Organism   Campylobacter lari subsp. lari strain LMG 8846     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1174401..1185321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLLT_RS06170 (CLLT_1229) cysK 1175341..1176243 (-) 903 WP_074692661.1 cysteine synthase A -
  CLLT_RS06175 (CLLT_1230) - 1176339..1176641 (-) 303 WP_012661929.1 HU family DNA-binding protein -
  CLLT_RS06180 (CLLT_1231) - 1176733..1177677 (-) 945 WP_081352035.1 hypothetical protein -
  CLLT_RS06185 - 1177740..1177889 (-) 150 WP_159427735.1 hypothetical protein -
  CLLT_RS06190 (CLLT_1232) - 1177898..1179400 (-) 1503 WP_074692660.1 MBOAT family protein -
  CLLT_RS06195 (CLLT_1233) waaF 1179401..1180321 (-) 921 WP_074692658.1 lipopolysaccharide heptosyltransferase II Regulator
  CLLT_RS06200 (CLLT_1234) - 1180374..1181180 (+) 807 WP_115613998.1 glycosyltransferase family 2 protein -
  CLLT_RS06205 (CLLT_1235) - 1181177..1181893 (-) 717 WP_074693089.1 acylneuraminate cytidylyltransferase family protein -
  CLLT_RS06210 (CLLT_1236) - 1181880..1182911 (-) 1032 WP_074693088.1 nucleotidyltransferase family protein -
  CLLT_RS06215 (CLLT_1237) neuC 1182908..1184068 (-) 1161 WP_115613999.1 UDP-N-acetylglucosamine 2-epimerase -
  CLLT_RS06220 (CLLT_1238) neuB 1184058..1185068 (-) 1011 WP_074693085.1 N-acetylneuraminate synthase -

Sequence

Protein


Download         Length: 306 a.a.        Molecular weight: 34685.85 Da        Isoelectric Point: 10.3366

>NTDB_id=447990 CLLT_RS06195 WP_074692658.1 1179401..1180321(-) (waaF) [Campylobacter lari subsp. lari strain LMG 8846]
MNIFINLPTWLGDAVMASAAIYAIKEKYPQAKFTFYGSFVSTELFKRFENAQILVENKKQRYKQILKARKNLGKFDLAFS
FRSAFSSKIILNLIKAKKRFYFDKNILKEEHQVLKYLNFIEEALNFKVASNSLKLPIKAKSTQKILGINPGAHFGSAKRW
EASYFARVAKEFSHTHKILIFGVESEKKICDEIENLLLNDGIKAKNLCGKTSIFTLCKNISMLDLLITNDSGPMHIGAVY
GVKTVAVFGSTKFSQTSPWQENAKIAHLNLACMPCMQKVCPLKHHKCMKDLKPEVVVNLARNFSGV

Nucleotide


Download         Length: 921 bp        

>NTDB_id=447990 CLLT_RS06195 WP_074692658.1 1179401..1180321(-) (waaF) [Campylobacter lari subsp. lari strain LMG 8846]
ATGAATATTTTTATCAACCTTCCCACTTGGCTTGGCGATGCAGTAATGGCTAGTGCGGCTATTTATGCTATAAAAGAAAA
ATATCCCCAAGCTAAATTTACTTTTTATGGTTCTTTTGTGAGCACAGAGCTTTTTAAACGTTTTGAAAATGCTCAAATTT
TAGTAGAAAATAAAAAGCAAAGATATAAACAAATTTTAAAAGCTAGAAAAAACCTTGGTAAATTTGATCTAGCTTTTTCG
TTTCGCTCGGCATTTTCAAGCAAGATTATTTTAAATCTAATCAAAGCAAAAAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACACCAAGTCTTAAAATACTTAAATTTCATAGAAGAAGCTTTAAATTTTAAAGTAGCTTCAAATTCTTTAA
AACTCCCTATAAAAGCAAAATCAACTCAAAAAATTTTAGGTATAAATCCAGGTGCGCATTTTGGAAGTGCGAAAAGATGG
GAGGCAAGCTATTTTGCAAGGGTTGCAAAAGAATTTAGCCATACCCATAAAATTTTAATTTTTGGCGTAGAAAGTGAAAA
AAAAATTTGCGATGAAATAGAAAATTTATTATTAAATGATGGTATAAAAGCTAAGAATTTATGTGGAAAAACTAGTATTT
TTACTCTTTGTAAAAATATATCTATGCTTGATTTACTCATCACAAACGATAGTGGTCCTATGCATATAGGTGCAGTTTAT
GGGGTAAAAACAGTGGCTGTTTTTGGTTCTACTAAATTTAGTCAAACCTCGCCTTGGCAAGAAAATGCTAAAATAGCACA
TTTAAATTTAGCTTGTATGCCTTGTATGCAAAAGGTCTGCCCTTTAAAACACCACAAATGCATGAAAGATTTAAAGCCTG
AAGTGGTAGTAAATTTAGCAAGAAATTTTTCAGGAGTATAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(109-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.537

100

0.66