Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   CLLT_RS01615 Genome accession   NZ_CP053830
Coordinates   296741..297919 (+) Length   392 a.a.
NCBI ID   WP_074692653.1    Uniprot ID   -
Organism   Campylobacter lari subsp. lari strain LMG 8846     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 291741..302919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLLT_RS01600 (CLLT_0319) cysQ 292245..292988 (+) 744 WP_115613979.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  CLLT_RS07900 (CLLT_0320) - 292991..294685 (+) 1695 WP_236585207.1 hypothetical protein -
  CLLT_RS01610 (CLLT_0321) - 294717..296744 (+) 2028 WP_074692654.1 capsular polysaccharide biosynthesis protein -
  CLLT_RS01615 (CLLT_0322) kpsS 296741..297919 (+) 1179 WP_074692653.1 capsule biosynthesis protein Regulator
  CLLT_RS01620 (CLLT_0323) - 297916..299424 (-) 1509 WP_074692652.1 SGNH/GDSL hydrolase family protein -
  CLLT_RS01625 (CLLT_0324) - 299588..300718 (+) 1131 WP_074692651.1 DUF829 domain-containing protein -
  CLLT_RS01630 (CLLT_0325) - 300727..302094 (+) 1368 WP_074692650.1 cytochrome P450 -
  CLLT_RS01635 (CLLT_0326) - 302097..302450 (+) 354 WP_039627957.1 membrane protein -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 46370.91 Da        Isoelectric Point: 10.1408

>NTDB_id=447980 CLLT_RS01615 WP_074692653.1 296741..297919(+) (kpsS) [Campylobacter lari subsp. lari strain LMG 8846]
MNLSKKLKKFSGKNVLLLQGPVGGFFRKIAIKIPKANVYKVNFNGGDFFFYPFKSINYTKSLAELEDFYKKLFEEKQIQV
IIMYNDCRKVHEIAINVAKQMGIEVWIFEEGYIRPNFITFEKDGVNANSTLPREKEFYLSQKKFDKDFKFKTFSSTFKNM
AFASFLYWLFAFLFSWYFNNSLHHRSLKLFDFLPWLCSVYRKNKYKITEKSLNEKILSLKQKYFLAILQVHNDTQLSHHY
KKTTEKFIEEVIISFANHAKAKSYLVFKHHPMDRGYRDYTKLIEDLSLRYNVEGRILYVHDLHLPTLLINARGTIVINST
VGLSALYHNSPLKVMGKAFYDVEGLTYQKSLHTFWKECRAYKPDAVLHAKFRNYVIYKTQVNGNFFKNTSLD

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=447980 CLLT_RS01615 WP_074692653.1 296741..297919(+) (kpsS) [Campylobacter lari subsp. lari strain LMG 8846]
ATGAATTTAAGTAAGAAGTTAAAAAAATTTTCCGGTAAAAATGTTTTGTTACTCCAAGGGCCTGTGGGAGGATTTTTTCG
CAAAATTGCTATAAAAATTCCAAAAGCTAATGTTTATAAAGTAAATTTTAATGGAGGAGATTTTTTCTTTTATCCTTTTA
AAAGCATTAATTACACTAAAAGTTTAGCCGAGCTTGAAGACTTTTATAAAAAGCTTTTTGAAGAAAAACAAATTCAAGTT
ATCATTATGTATAATGATTGTAGAAAAGTTCATGAAATAGCCATTAATGTTGCTAAACAAATGGGTATTGAAGTATGGAT
TTTTGAAGAAGGTTATATAAGACCAAACTTCATTACTTTTGAAAAAGATGGAGTGAATGCAAACTCCACTTTACCAAGAG
AAAAAGAATTTTATCTAAGTCAGAAAAAATTTGATAAAGATTTTAAATTTAAAACTTTCTCAAGCACTTTTAAAAATATG
GCCTTTGCTTCATTTTTATACTGGCTTTTTGCTTTTTTATTTTCTTGGTATTTTAATAATTCTTTACATCATAGAAGTTT
AAAACTATTTGACTTTTTACCTTGGCTTTGCTCAGTATATAGAAAAAACAAATACAAAATCACAGAAAAAAGTTTAAACG
AAAAAATTCTTTCCCTAAAGCAAAAGTATTTTTTGGCTATTTTACAAGTGCATAATGATACTCAACTCTCCCATCATTAT
AAAAAAACTACAGAAAAATTTATAGAAGAGGTGATTATCTCTTTTGCTAATCATGCCAAAGCAAAGTCATACCTAGTTTT
TAAACACCATCCTATGGACCGTGGTTATAGGGACTATACCAAACTTATAGAAGATTTGAGTTTAAGATACAATGTTGAGG
GTAGAATTTTATATGTACATGACTTACACTTACCTACGCTCTTAATCAATGCAAGGGGTACTATAGTCATAAATAGCACA
GTAGGGCTTTCTGCTTTATATCACAATAGCCCTTTAAAAGTTATGGGAAAAGCCTTTTATGATGTTGAAGGTTTGACTTA
TCAAAAAAGCTTGCATACTTTTTGGAAAGAATGCAGGGCATATAAGCCTGATGCTGTTTTGCACGCTAAATTTAGAAATT
ATGTGATATATAAAACCCAAGTCAATGGAAATTTTTTCAAAAATACTAGTTTAGATTAA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(80-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.772

100

0.622