Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CHLWT_RS03570 Genome accession   NZ_CP053828
Coordinates   698768..700108 (-) Length   446 a.a.
NCBI ID   WP_111949835.1    Uniprot ID   A0AAV6EI92
Organism   Campylobacter hyointestinalis subsp. lawsonii strain CHY5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 693768..705108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHLWT_RS03550 (CHLWT_0694) - 694069..694845 (+) 777 WP_112000652.1 undecaprenyl-diphosphate phosphatase -
  CHLWT_RS03555 (CHLWT_0695) - 694855..696126 (-) 1272 WP_111975117.1 aminotransferase class V-fold PLP-dependent enzyme -
  CHLWT_RS03560 (CHLWT_0696) - 696207..697058 (+) 852 WP_244948801.1 DUF234 domain-containing protein -
  CHLWT_RS03565 (CHLWT_0697) - 697046..698041 (+) 996 WP_176320855.1 HAMP domain-containing sensor histidine kinase -
  CHLWT_RS03570 (CHLWT_0698) radA 698768..700108 (-) 1341 WP_111949835.1 DNA repair protein RadA Machinery gene
  CHLWT_RS03575 (CHLWT_0699) ftsY 700095..700979 (-) 885 WP_112000651.1 signal recognition particle-docking protein FtsY -
  CHLWT_RS03580 (CHLWT_0700) - 700979..701524 (-) 546 WP_111970446.1 TlpA disulfide reductase family protein -
  CHLWT_RS03585 (CHLWT_0701) - 701575..702204 (+) 630 WP_112000650.1 5-formyltetrahydrofolate cyclo-ligase -
  CHLWT_RS03590 (CHLWT_0702) rny 702137..703690 (+) 1554 WP_059426778.1 ribonuclease Y -
  CHLWT_RS03595 (CHLWT_0703) - 703700..704293 (+) 594 WP_059426779.1 lipid-binding SYLF domain-containing protein -
  CHLWT_RS03600 (CHLWT_0704) - 704302..704865 (+) 564 WP_112000649.1 DedA family protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 48882.53 Da        Isoelectric Point: 7.1363

>NTDB_id=447967 CHLWT_RS03570 WP_111949835.1 698768..700108(-) (radA) [Campylobacter hyointestinalis subsp. lawsonii strain CHY5]
MAKTKTIFECEACGNQQSKWMGKCPGCGAWESFVELSSEQIKVINEISKISSSSSKAKAITDIKIEEISRRTTGDVELDI
VLGGGLVDGSLVLIGGSPGIGKSTLLLKIASNLAEFGESVLYVSGEESESQIKLRANRLNANSKNLYLLTEINLDNILAE
ISKKEYKTLVVDSIQTLYSDKISSAPGSVSQVREITFELMRLAKSKNICVFIIGHITKEGSIAGPRILEHMVDVVLYFEG
DSSMELRLLRGFKNRFGSTSEVGIFEMSKFGLISAKDATSKFFTRGDAVSGSAITVTMEGSRALIVEIQALVCESSYPKR
SSTGFDKNRLDMILALLERKLEIPLGHYDVFINVTGGVKINETACDLAVVAAIISSFRNRPISKESIFIGELSLNGEIRD
IFNLDARLKEASMQKFKNIIAPSKPIEKSNLKIFVAKEISQVIEWM

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=447967 CHLWT_RS03570 WP_111949835.1 698768..700108(-) (radA) [Campylobacter hyointestinalis subsp. lawsonii strain CHY5]
ATGGCAAAAACTAAAACTATATTTGAGTGTGAAGCTTGCGGAAATCAACAGAGCAAATGGATGGGCAAATGTCCTGGATG
CGGGGCTTGGGAAAGCTTTGTGGAGCTTAGTAGCGAGCAAATAAAAGTCATCAATGAAATCTCAAAGATAAGTAGTTCTT
CATCAAAAGCAAAAGCCATAACTGATATAAAAATAGAAGAAATTTCACGCCGCACTACAGGAGACGTTGAGCTTGATATC
GTTCTTGGTGGCGGCTTAGTAGATGGCTCACTTGTGCTTATCGGCGGAAGTCCTGGCATCGGAAAATCAACACTGCTTTT
AAAAATCGCTTCAAATTTGGCCGAATTTGGTGAAAGTGTTTTATACGTAAGTGGGGAAGAAAGCGAGTCTCAAATAAAGC
TACGCGCAAACAGACTAAATGCGAACAGCAAAAATCTATATCTTTTAACAGAGATAAACTTAGACAATATCCTAGCAGAA
ATCTCGAAAAAAGAGTATAAAACGCTAGTAGTGGATTCTATACAAACATTATATAGTGATAAAATAAGCTCAGCTCCTGG
TTCAGTTTCGCAAGTAAGAGAGATAACTTTTGAGCTGATGAGACTTGCAAAAAGTAAAAATATATGCGTGTTTATCATCG
GACATATCACAAAAGAAGGCTCTATTGCTGGACCTAGAATTTTAGAGCATATGGTTGATGTCGTGCTGTATTTTGAAGGC
GATAGCAGTATGGAGCTCAGGCTTCTTAGAGGATTTAAAAATCGCTTTGGCTCAACTAGTGAAGTTGGGATTTTTGAAAT
GAGTAAATTTGGTCTGATAAGCGCAAAAGACGCTACTAGCAAATTTTTTACTAGAGGAGATGCAGTGAGTGGCTCAGCCA
TAACAGTTACGATGGAAGGAAGTCGCGCACTTATAGTAGAGATACAAGCTCTAGTTTGCGAGAGTAGCTATCCAAAAAGA
AGTTCCACCGGATTTGATAAAAATCGTCTAGATATGATACTTGCTTTATTAGAGCGAAAGCTTGAAATTCCCTTGGGGCA
TTATGACGTTTTTATAAATGTTACTGGCGGAGTAAAGATAAATGAGACCGCATGTGATCTAGCTGTTGTAGCAGCCATCA
TATCGAGCTTTAGAAATCGCCCTATCAGCAAAGAAAGCATCTTTATAGGTGAGCTTAGCTTAAATGGAGAAATCAGAGAT
ATATTTAACCTTGATGCAAGGCTAAAAGAAGCTAGTATGCAAAAATTTAAAAATATAATAGCACCGAGCAAACCGATAGA
AAAATCAAATTTAAAGATATTTGTAGCAAAAGAAATTTCACAAGTTATTGAATGGATGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(82-220)

Subunit ChlI of Mg-chelatase (ChlI)

(347-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.348

96.637

0.487
  radA Streptococcus pneumoniae Rx1

46.861

100

0.469
  radA Streptococcus pneumoniae D39

46.861

100

0.469
  radA Streptococcus pneumoniae R6

46.861

100

0.469
  radA Streptococcus pneumoniae TIGR4

46.861

100

0.469
  radA Streptococcus mitis SK321

47.294

95.291

0.451
  radA Streptococcus mitis NCTC 12261

47.059

95.291

0.448