Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CHHT_RS01730 Genome accession   NZ_CP053827
Coordinates   314932..315876 (-) Length   314 a.a.
NCBI ID   WP_034962340.1    Uniprot ID   A0A855NA17
Organism   Campylobacter hyointestinalis subsp. hyointestinalis strain CCUG 14169     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 309932..320876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHHT_RS01695 (CHHT_0338) ccoS 310368..310598 (+) 231 WP_034962355.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  CHHT_RS01700 (CHHT_0339) - 310652..310966 (-) 315 WP_034962352.1 c-type cytochrome -
  CHHT_RS01705 (CHHT_0340) - 311105..311419 (-) 315 WP_034962350.1 c-type cytochrome -
  CHHT_RS01710 (CHHT_0341) gmhB 311560..312066 (+) 507 WP_051663733.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  CHHT_RS01715 (CHHT_0342) rfaD 312063..313031 (+) 969 WP_034962346.1 ADP-glyceromanno-heptose 6-epimerase -
  CHHT_RS01720 (CHHT_0343) rfaE1 313024..314400 (+) 1377 WP_034962344.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  CHHT_RS01725 (CHHT_0344) gmhA 314403..314966 (+) 564 WP_034962342.1 D-sedoheptulose 7-phosphate isomerase -
  CHHT_RS01730 (CHHT_0345) waaF 314932..315876 (-) 945 WP_034962340.1 lipopolysaccharide heptosyltransferase II Regulator
  CHHT_RS01735 (CHHT_0346) - 315860..316891 (-) 1032 WP_034962339.1 glycosyltransferase family 4 protein -
  CHHT_RS01740 (CHHT_0347) - 316973..318274 (+) 1302 WP_064019631.1 O-antigen ligase -
  CHHT_RS01745 (CHHT_0348) - 318249..319169 (+) 921 WP_034962333.1 glycosyltransferase family 9 protein -
  CHHT_RS01750 (CHHT_0349) - 319166..320221 (+) 1056 WP_034962330.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 35746.89 Da        Isoelectric Point: 9.4464

>NTDB_id=447952 CHHT_RS01730 WP_034962340.1 314932..315876(-) (waaF) [Campylobacter hyointestinalis subsp. hyointestinalis strain CCUG 14169]
MRILIELPTWLGDAVMASAAVQSLALNYPNCKITFFGSEISTSIYSSYPNCENIIIDNSKKAKFRLFYLLKTALNLDKFD
IAVSFRSHFYSKVFFKFIKADKKAIFTPTKNEIHQVQKYMNFIINCLSLKQSIDELKLYFAPFKFKNKTLGLNPGASYGS
AKRWYPQYFANVAINLKKSYEVVIFGGKNEQNICDEIALELEKNGVKYQNLCNKTTICELASFIAGLDMFITNDSGPMHI
AATFKVPTIALFGPTKFKETSPYKNNNAKILHLDLDCMPCMKRVCPLNSHECMKNLTPKMVLDAIYKLNPQLDK

Nucleotide


Download         Length: 945 bp        

>NTDB_id=447952 CHHT_RS01730 WP_034962340.1 314932..315876(-) (waaF) [Campylobacter hyointestinalis subsp. hyointestinalis strain CCUG 14169]
ATGCGCATACTAATTGAGCTGCCCACATGGCTAGGTGACGCCGTGATGGCAAGCGCTGCTGTTCAAAGTCTAGCCCTAAA
CTATCCAAACTGTAAGATAACCTTTTTTGGATCAGAGATTAGCACGAGTATCTACAGCTCTTATCCAAACTGTGAAAATA
TCATTATCGATAATTCGAAAAAAGCTAAGTTCAGACTGTTTTATCTGCTAAAAACAGCTTTAAATTTAGATAAATTTGAT
ATAGCCGTAAGTTTTAGAAGTCACTTTTACTCAAAAGTATTTTTTAAATTTATAAAAGCAGACAAAAAAGCTATTTTTAC
ACCTACAAAAAACGAAATTCATCAGGTACAAAAATATATGAATTTTATTATCAATTGTCTGAGTTTAAAACAAAGCATAG
ATGAGCTAAAATTGTATTTTGCTCCTTTTAAATTTAAAAACAAAACTCTAGGGCTAAATCCAGGAGCAAGCTACGGAAGT
GCGAAAAGATGGTATCCGCAATATTTTGCAAACGTAGCTATAAATTTAAAAAAGAGTTATGAAGTTGTCATTTTTGGAGG
AAAAAATGAACAAAATATCTGCGACGAAATAGCATTAGAACTTGAAAAAAACGGAGTAAAATACCAAAATTTATGTAACA
AAACCACTATTTGTGAGCTAGCAAGCTTTATAGCAGGTCTTGATATGTTTATCACTAACGATAGCGGTCCTATGCACATA
GCAGCAACTTTTAAAGTGCCTACTATAGCACTTTTTGGACCTACTAAGTTCAAAGAAACCTCTCCATATAAAAATAACAA
TGCAAAGATACTACATCTTGATTTAGACTGTATGCCCTGTATGAAGAGAGTTTGTCCTTTGAACTCACACGAATGTATGA
AAAATCTAACACCAAAAATGGTGCTAGATGCTATTTATAAGCTAAATCCACAGCTTGACAAATAG

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(137-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A855NA17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.243

99.682

0.481