Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CCVT_RS04085 Genome accession   NZ_CP053826
Coordinates   827824..829164 (-) Length   446 a.a.
NCBI ID   WP_018136605.1    Uniprot ID   -
Organism   Campylobacter curvus strain ATCC 35224     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 822824..834164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCVT_RS04050 (CCVT_0802) - 822856..823518 (-) 663 WP_018136612.1 lipid-binding SYLF domain-containing protein -
  CCVT_RS04055 (CCVT_0803) - 823649..824260 (+) 612 WP_018136611.1 trimeric intracellular cation channel family protein -
  CCVT_RS04060 (CCVT_0804) - 824270..825433 (+) 1164 WP_018136610.1 aspartate aminotransferase family protein -
  CCVT_RS04065 (CCVT_0805) - 825423..826409 (+) 987 WP_018136609.1 SAM-dependent methyltransferase -
  CCVT_RS04070 (CCVT_0806) ybaK 826406..826882 (-) 477 WP_018136608.1 Cys-tRNA(Pro) deacylase -
  CCVT_RS04075 (CCVT_0807) fliL 826940..827479 (+) 540 WP_018136607.1 flagellar basal body-associated protein FliL -
  CCVT_RS04080 (CCVT_0808) acpS 827476..827820 (+) 345 WP_018136606.1 holo-ACP synthase -
  CCVT_RS04085 (CCVT_0809) radA 827824..829164 (-) 1341 WP_018136605.1 DNA repair protein RadA Machinery gene
  CCVT_RS04090 (CCVT_0810) ftsY 829202..830068 (-) 867 WP_018136604.1 signal recognition particle-docking protein FtsY -
  CCVT_RS04095 (CCVT_0811) - 830068..830658 (-) 591 WP_018136603.1 TlpA disulfide reductase family protein -
  CCVT_RS04100 (CCVT_0812) - 830714..831346 (+) 633 WP_026175476.1 5-formyltetrahydrofolate cyclo-ligase -
  CCVT_RS04105 (CCVT_0813) rny 831279..832832 (+) 1554 WP_026175475.1 ribonuclease Y -
  CCVT_RS04110 (CCVT_0814) - 832847..833434 (+) 588 WP_009651535.1 lipid-binding SYLF domain-containing protein -
  CCVT_RS04115 (CCVT_0815) - 833443..834012 (+) 570 WP_018136600.1 DedA family protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 48977.65 Da        Isoelectric Point: 7.1023

>NTDB_id=447943 CCVT_RS04085 WP_018136605.1 827824..829164(-) (radA) [Campylobacter curvus strain ATCC 35224]
MAKSKIIFECQACGNQQSKWLGKCPQCGAWDSFVELNGEQIKAVKEMAKISTSPSKAVSINEVQIENINRFSTKDSELDL
VLGGGVVEGSLVLIGGSPGIGKSTLLLKIASNLAKDGKKTLYVSGEESASQIKMRAQRLEAIDERLYLLTEICLENITAE
IQKNDYKILVIDSIQTLYSEEVSSAPGSISQVREITFELMRLAKDKNICIFIIGHITKEGSIAGPRVLEHMVDVVLYFEG
DASRELRMLRGFKNRFGSTSEVGIFEMSAKGLVSASEISSKFFTRGSAMSGSAITVIMEGSRALSVEVQALVCESAYPKR
SCTGYERNRLDMLLALLERKVELPLGHYDVFVNISGGVKVGETAADLAVVAAIISSFKNRPISKDSVFIGELSLNGEIRE
VFNLDQRLKEAKTQKFKNAIIPNKPLDTQGLKCFYAKDIVQVLEWM

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=447943 CCVT_RS04085 WP_018136605.1 827824..829164(-) (radA) [Campylobacter curvus strain ATCC 35224]
GTGGCAAAATCTAAAATAATTTTCGAATGTCAAGCATGCGGCAACCAACAAAGCAAATGGCTAGGTAAATGTCCTCAATG
CGGGGCTTGGGATAGCTTTGTAGAGCTAAACGGCGAGCAAATAAAAGCTGTAAAAGAGATGGCTAAAATTTCAACATCGC
CAAGCAAAGCCGTGAGTATAAACGAGGTGCAGATAGAAAATATCAATCGCTTCAGCACCAAGGACAGCGAGCTTGACCTG
GTACTTGGCGGCGGAGTGGTCGAGGGCTCGCTCGTACTCATCGGCGGCAGCCCGGGTATCGGCAAATCGACCCTGCTTTT
AAAAATCGCCTCAAATTTAGCCAAAGACGGTAAAAAAACTCTCTACGTCAGTGGCGAAGAGAGTGCCAGCCAGATAAAAA
TGCGCGCACAAAGACTAGAAGCGATAGATGAAAGACTCTATCTTTTGACCGAAATTTGCCTCGAAAACATCACCGCTGAA
ATTCAAAAAAACGACTACAAAATTTTAGTCATCGACTCGATCCAGACCCTTTACAGCGAGGAAGTGAGCTCGGCTCCGGG
CTCTATTTCGCAGGTTCGCGAGATAACTTTCGAGCTCATGCGCCTTGCAAAAGACAAAAATATCTGCATATTCATCATCG
GGCACATCACTAAAGAGGGCTCGATAGCCGGCCCTAGAGTGCTCGAGCATATGGTCGATGTGGTGCTTTATTTCGAGGGT
GACGCCAGTCGTGAGCTTAGGATGCTAAGAGGGTTTAAAAATCGCTTCGGCTCTACGAGCGAGGTCGGTATCTTTGAAAT
GAGTGCCAAAGGACTGGTCAGCGCAAGCGAAATTTCAAGCAAATTTTTTACCAGAGGTAGCGCGATGAGCGGTAGCGCGA
TAACGGTCATAATGGAAGGCTCGCGCGCGCTTAGCGTCGAGGTGCAAGCCCTAGTCTGCGAGAGTGCATATCCTAAACGA
AGCTGCACGGGCTACGAGCGAAATCGCCTCGATATGCTTCTAGCCCTGCTCGAGCGTAAAGTAGAGCTACCACTTGGACA
TTACGATGTATTTGTAAATATCTCGGGCGGCGTGAAAGTAGGCGAAACGGCGGCCGATCTAGCCGTAGTCGCCGCGATAA
TCAGCAGCTTCAAAAACCGCCCTATAAGCAAAGATAGTGTATTTATCGGCGAGCTTAGTCTAAACGGTGAGATAAGAGAG
GTCTTTAATCTCGATCAGCGCCTAAAAGAGGCAAAAACACAAAAATTTAAAAACGCCATAATCCCAAACAAACCGCTCGA
TACGCAAGGGTTAAAATGCTTTTATGCAAAAGACATAGTCCAAGTACTCGAGTGGATGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(68-220)

Subunit ChlI of Mg-chelatase (ChlI)

(349-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

49.884

96.637

0.482
  radA Streptococcus pneumoniae Rx1

49.884

96.637

0.482
  radA Streptococcus pneumoniae D39

49.884

96.637

0.482
  radA Streptococcus pneumoniae TIGR4

49.884

96.637

0.482
  radA Streptococcus mitis SK321

49.884

96.637

0.482
  radA Bacillus subtilis subsp. subtilis str. 168

49.425

97.534

0.482
  radA Streptococcus mitis NCTC 12261

49.652

96.637

0.48