Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CCVT_RS01960 Genome accession   NZ_CP053826
Coordinates   415048..415992 (-) Length   314 a.a.
NCBI ID   WP_018136992.1    Uniprot ID   -
Organism   Campylobacter curvus strain ATCC 35224     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 410048..420992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCVT_RS01940 (CCVT_0379) - 410886..411731 (-) 846 WP_026175522.1 energy transducer TonB -
  CCVT_RS01945 (CCVT_0380) exbD 411706..412086 (-) 381 WP_018136994.1 TonB system transport protein ExbD -
  CCVT_RS01950 (CCVT_0381) exbB 412073..412501 (-) 429 WP_009651000.1 TonB-system energizer ExbB -
  CCVT_RS01955 (CCVT_0382) - 412825..414765 (+) 1941 WP_018136993.1 TonB-dependent receptor domain-containing protein -
  CCVT_RS01960 (CCVT_0383) waaF 415048..415992 (-) 945 WP_018136992.1 lipopolysaccharide heptosyltransferase II Regulator
  CCVT_RS01965 (CCVT_0384) - 415989..417020 (-) 1032 WP_018136991.1 glycosyltransferase family 4 protein -
  CCVT_RS01970 (CCVT_0385) - 416992..418014 (-) 1023 WP_227898142.1 O-antigen ligase -
  CCVT_RS01975 (CCVT_0386) - 418152..419261 (-) 1110 WP_018136989.1 glycosyltransferase -
  CCVT_RS01980 (CCVT_0387) - 419332..420090 (+) 759 WP_026175520.1 polysaccharide deacetylase family protein -

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 34784.70 Da        Isoelectric Point: 9.9672

>NTDB_id=447940 CCVT_RS01960 WP_018136992.1 415048..415992(-) (waaF) [Campylobacter curvus strain ATCC 35224]
MRVFIELPTWLGDAVMASAAVENIAANFTQAKLTFFGSFAACELFKAHPKCETAIIDESKRAKFRVWWLFKNARRLGKFD
AAFSFRSGLASKFLLFCLRAGRKFQFQKTAVSLHQVQKYLNFVQSSLNLSRVTQNLSLNFTPCKFDAPVLGLNPGASYGS
AKRWYPEYFAQVALKFKDRFRIVIFGGSGELEICGKIEQILAANGVKCDNLAGKTSIKELCEKIGGVGRSGGVFITNDSG
PMHIAAAYKVPTIALFGPTKFSETSPWQNENARILHLNLECMPCMKRVCPLGTHACMKGLTPNLVIKTIEEILA

Nucleotide


Download         Length: 945 bp        

>NTDB_id=447940 CCVT_RS01960 WP_018136992.1 415048..415992(-) (waaF) [Campylobacter curvus strain ATCC 35224]
ATGAGGGTTTTCATCGAGCTTCCGACTTGGCTGGGAGACGCCGTGATGGCGAGTGCGGCGGTCGAAAATATCGCGGCAAA
TTTCACGCAAGCAAAGCTCACATTTTTTGGCTCGTTTGCCGCCTGTGAGCTTTTTAAGGCGCATCCAAAGTGCGAAACGG
CGATCATCGATGAGAGCAAAAGGGCTAAATTTAGGGTTTGGTGGCTGTTTAAAAACGCGCGCAGACTTGGTAAATTTGAC
GCGGCGTTTAGTTTTAGAAGTGGGCTTGCGAGCAAATTTTTGCTTTTTTGCCTGCGTGCGGGGCGTAAATTTCAGTTTCA
AAAGACCGCCGTTAGCCTTCATCAGGTGCAAAAATACCTAAATTTCGTGCAAAGCTCGCTAAATTTAAGCCGTGTTACGC
AAAATTTGAGCCTAAATTTCACTCCGTGCAAATTTGACGCGCCCGTGCTCGGGCTAAATCCGGGAGCGAGCTACGGTAGC
GCAAAACGCTGGTATCCCGAGTATTTCGCGCAGGTTGCATTAAAATTTAAGGATAGATTTAGGATTGTCATCTTTGGCGG
TAGCGGTGAGCTTGAAATTTGCGGCAAAATCGAGCAAATTTTAGCCGCAAATGGCGTAAAATGCGACAACCTAGCGGGCA
AAACCAGCATAAAAGAGCTGTGCGAAAAGATCGGCGGCGTAGGGCGAAGCGGCGGGGTTTTTATCACAAACGACAGCGGC
CCGATGCACATCGCGGCAGCCTATAAAGTGCCTACCATCGCGCTTTTTGGGCCGACGAAATTTAGCGAAACCAGCCCGTG
GCAAAACGAAAACGCGCGGATCTTGCACCTAAATTTAGAGTGTATGCCGTGCATGAAGCGCGTCTGTCCACTCGGCACGC
ATGCGTGTATGAAAGGCTTGACGCCAAATTTGGTCATAAAAACGATAGAAGAAATTTTGGCTTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(118-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.059

100

0.484