Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CARM_RS06380 Genome accession   NZ_CP053825
Coordinates   1247414..1248334 (-) Length   306 a.a.
NCBI ID   WP_139425636.1    Uniprot ID   -
Organism   Campylobacter armoricus strain CCUG 73571     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1242414..1253334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CARM_RS06350 (CARM_1251) cysK 1243390..1244292 (-) 903 WP_139425646.1 cysteine synthase A -
  CARM_RS06355 (CARM_1252) - 1244387..1244689 (-) 303 WP_139425644.1 HU family DNA-binding protein -
  CARM_RS06360 - 1244783..1245064 (-) 282 WP_139425642.1 hypothetical protein -
  CARM_RS06365 - 1245077..1245559 (-) 483 WP_139425640.1 hypothetical protein -
  CARM_RS06370 - 1245612..1245902 (-) 291 WP_139425638.1 hypothetical protein -
  CARM_RS06375 (CARM_1254) - 1245911..1247413 (-) 1503 Protein_1236 MBOAT family O-acyltransferase -
  CARM_RS06380 (CARM_1255) waaF 1247414..1248334 (-) 921 WP_139425636.1 lipopolysaccharide heptosyltransferase II Regulator
  CARM_RS06385 (CARM_1256) - 1248393..1249217 (+) 825 WP_139425634.1 glycosyltransferase family 2 protein -
  CARM_RS06390 (CARM_1257) - 1249209..1250060 (-) 852 WP_139425632.1 alpha-2,3-sialyltransferase -
  CARM_RS06395 (CARM_1258) - 1250123..1252048 (-) 1926 WP_236633240.1 motility associated factor glycosyltransferase family protein -
  CARM_RS06400 (CARM_1259) - 1252048..1252812 (-) 765 WP_139425628.1 oxidoreductase -

Sequence

Protein


Download         Length: 306 a.a.        Molecular weight: 34934.17 Da        Isoelectric Point: 10.2969

>NTDB_id=447931 CARM_RS06380 WP_139425636.1 1247414..1248334(-) (waaF) [Campylobacter armoricus strain CCUG 73571]
MNIFINLPTWLGDAVMASSAIYAIKEKYPKAKFTFYGSFVSTELFKRFENTQILVEHKKQRYKQILKARKSFGKFDLAFS
FRSAFSSKIILNLIKAKKRFYFDKNILKEEHQVLKYLNFIEKALNFKATSNSLKLPIKEKSTQKILGINPGAHFGSAKRW
EANYFARVAKEFSSTHQILIFGVESEREICDEIEHFLLKEGIKAKNLCGKTSIYTLCKNISMLDLLITNDSGPMHIGAVY
GVKTVAIFGSTKFSQTSPWQENAKIAHLNLACMPCMQKVCPLKHHKCMKDLKPELVINLAKNLLGV

Nucleotide


Download         Length: 921 bp        

>NTDB_id=447931 CARM_RS06380 WP_139425636.1 1247414..1248334(-) (waaF) [Campylobacter armoricus strain CCUG 73571]
ATGAATATTTTTATCAATCTTCCTACATGGCTTGGTGATGCGGTGATGGCTAGTTCGGCTATTTATGCTATCAAAGAAAA
ATATCCTAAAGCTAAATTTACTTTTTATGGTTCTTTTGTGAGTACAGAGCTTTTTAAGCGTTTTGAAAATACTCAAATTT
TAGTAGAACATAAAAAGCAAAGATACAAACAAATTTTAAAAGCCAGAAAAAGCTTTGGCAAATTTGATTTAGCTTTTTCA
TTTCGTTCAGCATTTTCAAGTAAGATCATTTTAAATCTAATCAAAGCAAAAAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACACCAAGTTTTAAAATACTTAAATTTCATAGAAAAAGCCTTAAATTTTAAAGCCACTTCAAATTCTTTAA
AACTTCCTATAAAAGAAAAATCAACTCAAAAAATTTTAGGTATAAATCCAGGTGCGCATTTTGGAAGTGCGAAAAGATGG
GAAGCAAATTATTTTGCAAGGGTAGCAAAAGAATTTAGCTCCACACACCAAATTTTAATCTTTGGAGTAGAGAGTGAGAG
AGAAATTTGTGATGAAATTGAGCATTTTCTTTTAAAAGAAGGCATAAAAGCAAAAAATCTTTGTGGTAAAACTAGCATTT
ATACTTTATGTAAAAATATTTCTATGCTTGATTTACTCATCACAAACGATAGTGGTCCTATGCATATAGGTGCAGTTTAT
GGGGTGAAAACAGTGGCTATTTTTGGCTCGACTAAATTCAGTCAAACATCACCTTGGCAAGAAAATGCCAAAATAGCTCA
TTTAAATTTAGCTTGTATGCCTTGTATGCAAAAGGTTTGTCCTTTAAAACACCACAAATGTATGAAAGATTTAAAACCTG
AATTAGTGATAAATCTAGCAAAAAATCTTTTAGGAGTATAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(109-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.605

100

0.673