Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   CARM_RS02500 Genome accession   NZ_CP053825
Coordinates   477306..479099 (-) Length   597 a.a.
NCBI ID   WP_139426706.1    Uniprot ID   A0A7L5I521
Organism   Campylobacter armoricus strain CCUG 73571     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 472306..484099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CARM_RS02475 (CARM_0490) dnaJ 472560..473681 (-) 1122 WP_139426698.1 molecular chaperone DnaJ -
  CARM_RS02480 (CARM_0491) - 473803..474474 (+) 672 WP_039617824.1 response regulator transcription factor -
  CARM_RS02485 (CARM_0492) - 474471..475703 (+) 1233 WP_139426700.1 ArsS family sensor histidine kinase -
  CARM_RS02490 (CARM_0493) recR 475704..476279 (+) 576 WP_236103558.1 recombination mediator RecR -
  CARM_RS02495 (CARM_0494) - 476266..477309 (-) 1044 WP_139426704.1 hypothetical protein -
  CARM_RS02500 (CARM_0495) uvrC 477306..479099 (-) 1794 WP_139426706.1 excinuclease ABC subunit UvrC Machinery gene
  CARM_RS02505 (CARM_0496) - 479080..479550 (-) 471 WP_167507488.1 hypothetical protein -
  CARM_RS02510 (CARM_0498) nhaD 479685..481040 (+) 1356 WP_139426710.1 sodium:proton antiporter NhaD -
  CARM_RS02515 (CARM_0499) guaA 481050..482585 (+) 1536 WP_139426712.1 glutamine-hydrolyzing GMP synthase -
  CARM_RS02520 (CARM_0500) - 482586..483137 (-) 552 WP_139426714.1 methyltransferase domain-containing protein -

Sequence

Protein


Download         Length: 597 a.a.        Molecular weight: 69991.08 Da        Isoelectric Point: 9.5549

>NTDB_id=447922 CARM_RS02500 WP_139426706.1 477306..479099(-) (uvrC) [Campylobacter armoricus strain CCUG 73571]
MLEAELKTLPNSSGVYQYFDIHGKLLYVGKAKNLKNRIKSYFNFTPKLCPNPNNSLRIQKMISETHHLEFITTNSEADAL
ILENSFIKQLHPKYNILLRDDKTYPYIYLDLNEEFPRFEITRKIIKKSKIKYFGPFFKGAKELINALYLTFPIRQKKTCK
ELCLFYQIKRCKGPCEKKISKQDYEEIIQKATYALLNPLSLVKNLENKMLEYAKNENYEEAAQTRDQIKTIQDLSIKIQI
DLAKLEDFDVFAIYCEENILSMVRFVINNGKIISSNHKILVLKNQNEFDKNAIYKQYILENFTKETPLNSNHIYIYEDFE
DMELLQDLLSERFSKKFYIKTPKLGEKKDLCNLALENAKINIQKHLKNEYYLILKEIKEYFKLQNYPNHIEIFDNSHMQG
IANVGAFVVFKDGNFDKNSYRHYHLTHKNDYEQMLEILTKRALSFDKNPPPDLWVIDGGSTLLKLANDIIKSSGANVDIL
AISKEKIDAKAYRAKGSAKDKLYTLEGKIQLLPEDKKLQFIQKLRDEAHRFAINFHQNTKRKQDLQSSKLIQLGISQAYI
KKFLDYYGSFDKIFKADFEELKLLSNVKTAKLIKGNL

Nucleotide


Download         Length: 1794 bp        

>NTDB_id=447922 CARM_RS02500 WP_139426706.1 477306..479099(-) (uvrC) [Campylobacter armoricus strain CCUG 73571]
ATGCTAGAAGCCGAACTTAAAACACTACCAAATTCATCGGGTGTCTATCAATATTTTGATATTCACGGAAAACTTTTATA
TGTTGGCAAGGCAAAAAATTTAAAAAATAGAATCAAGAGTTATTTCAATTTTACTCCAAAACTTTGCCCTAATCCAAACA
ATAGCTTAAGAATTCAAAAAATGATTAGTGAGACTCATCATTTAGAATTTATTACAACAAACAGCGAAGCTGATGCACTA
ATCTTAGAAAATTCTTTCATAAAACAACTCCATCCAAAATATAATATATTGTTAAGAGATGATAAAACATATCCTTATAT
TTATTTAGATTTAAATGAAGAATTTCCAAGATTTGAAATCACAAGAAAAATTATAAAAAAAAGTAAAATAAAATATTTTG
GACCTTTTTTTAAAGGAGCAAAAGAGCTAATAAATGCTCTATACCTAACTTTTCCAATAAGGCAAAAGAAAACATGTAAA
GAACTTTGCTTGTTTTACCAAATAAAACGCTGCAAGGGTCCTTGTGAGAAAAAAATTTCTAAGCAAGATTATGAAGAAAT
CATACAAAAAGCAACATACGCTCTTTTAAATCCTTTGTCTTTGGTGAAAAATTTAGAAAATAAAATGCTTGAATATGCTA
AAAACGAAAATTACGAAGAAGCAGCTCAAACTAGAGATCAGATTAAAACAATTCAAGATTTAAGCATTAAAATCCAAATT
GATCTTGCTAAATTAGAAGATTTTGATGTTTTTGCAATATATTGTGAAGAAAATATACTTTCCATGGTTCGTTTTGTTAT
AAATAATGGAAAAATAATTAGTTCAAATCATAAAATTTTAGTATTAAAAAATCAAAATGAATTTGATAAAAATGCAATTT
ACAAACAATACATTTTAGAAAATTTTACCAAAGAAACACCATTAAATTCAAATCATATTTATATATATGAAGACTTTGAA
GATATGGAACTTTTACAAGATTTACTTAGTGAAAGATTTTCTAAAAAATTTTATATCAAAACACCAAAATTAGGAGAAAA
AAAGGATTTATGTAACCTAGCTTTAGAAAATGCAAAAATCAATATACAAAAACATTTAAAAAATGAATACTATTTAATTT
TAAAAGAAATTAAAGAGTATTTTAAACTGCAAAATTATCCTAACCATATAGAAATTTTTGATAATTCTCATATGCAAGGA
ATTGCAAATGTTGGTGCTTTTGTGGTATTTAAAGATGGAAATTTTGATAAAAATTCTTATAGACATTACCATTTAACACA
TAAAAATGACTATGAACAAATGCTTGAAATTCTTACTAAAAGAGCTTTATCTTTTGATAAAAATCCACCACCTGATTTAT
GGGTGATTGATGGTGGTAGCACCTTGCTAAAACTGGCAAATGATATTATAAAAAGCTCTGGTGCAAATGTAGATATATTA
GCTATATCTAAAGAAAAAATAGATGCAAAAGCTTATAGAGCAAAAGGAAGCGCAAAAGATAAGCTTTATACATTAGAAGG
TAAAATCCAACTTTTGCCTGAAGATAAGAAGTTACAATTTATACAAAAATTACGCGATGAAGCGCATCGTTTTGCTATTA
ATTTTCATCAAAATACAAAAAGAAAGCAAGATTTACAAAGCTCGAAGTTAATACAACTTGGAATTTCTCAAGCTTATATT
AAAAAATTTCTAGATTATTATGGTAGTTTTGATAAAATTTTCAAGGCTGATTTTGAAGAATTAAAATTACTTTCAAATGT
AAAAACTGCAAAATTAATTAAGGGAAATTTATGA

Domains

Predicted by InterproScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(378-533)

GIY-YIG catalytic domain (GIY-YIG)

(13-95)

UvrB/uvrC motif (UVR)

(201-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L5I521

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

49.829

98.157

0.489