Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   CARM_RS01860 Genome accession   NZ_CP053825
Coordinates   358467..359858 (+) Length   463 a.a.
NCBI ID   WP_139424572.1    Uniprot ID   A0A7L5HM58
Organism   Campylobacter armoricus strain CCUG 73571     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 353467..364858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CARM_RS01845 (CARM_0365) - 353852..354496 (+) 645 WP_139424566.1 HAD family hydrolase -
  CARM_RS01850 (CARM_0366) nifJ 354614..358168 (+) 3555 WP_139424568.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  CARM_RS01855 (CARM_0367) - 358172..358495 (+) 324 WP_139424569.1 hypothetical protein -
  CARM_RS01860 (CARM_0368) ctsD 358467..359858 (+) 1392 WP_139424572.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CARM_RS01865 (CARM_0369) - 359839..360177 (+) 339 WP_139424574.1 CDC27 family protein -
  CARM_RS01870 (CARM_0370) - 360146..361720 (+) 1575 WP_161593838.1 GspE/PulE family protein -
  CARM_RS01875 (CARM_0371) - 361717..362883 (+) 1167 WP_139424577.1 type II secretion system F family protein -
  CARM_RS01880 (CARM_0372) - 362873..363055 (-) 183 WP_039666669.1 hypothetical protein -
  CARM_RS01885 (CARM_0373) - 363180..364091 (+) 912 WP_139424579.1 hypothetical protein -
  CARM_RS01890 - 364175..364408 (+) 234 WP_139493258.1 hypothetical protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52660.53 Da        Isoelectric Point: 7.0575

>NTDB_id=447920 CARM_RS01860 WP_139424572.1 358467..359858(+) (ctsD) [Campylobacter armoricus strain CCUG 73571]
MIKIIFLFISIFTFASASINQCNQRVFDISIEDKTSLLEILNELGRECSYSIIIKDLVAKEKLDNMQNYLHIKKMTLREI
FNLLLKENNLSYEFEKNILKIYGKKVKTFKIHYISSIREGQSITKASVDSRPRQGDYDNAKEADNLVISTDRFDFWEKIS
EEIQALLDENTSKPIININAGIITLNATPYELARVEKYLYDLNNRLKKQVLIDVSIVAVHLNKSHSSGINWQELAIKLNG
DDNDFIINKGGIRNINLKANIETKAILNLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISET
FNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNYRQNKPRNIAPDTIQKKLSTVVEIDDGQTLILGGLISKN
TITNNNEISALSKIPLFGFLFQGKQNLQDSSEIVFIIKPKLIKEDRKILSLKELGFEHEDGMF

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=447920 CARM_RS01860 WP_139424572.1 358467..359858(+) (ctsD) [Campylobacter armoricus strain CCUG 73571]
ATGATAAAAATAATATTCTTATTTATTAGTATTTTTACTTTTGCTAGTGCATCTATAAATCAATGCAATCAGCGAGTATT
CGATATAAGTATAGAAGATAAAACTTCTTTACTTGAAATTTTAAATGAACTTGGTAGAGAATGTAGTTATAGTATTATTA
TAAAAGATTTGGTGGCTAAAGAAAAACTTGATAATATGCAAAATTATTTACATATAAAAAAAATGACTTTAAGAGAAATT
TTTAATTTGTTATTGAAAGAAAATAATCTTTCTTATGAATTTGAGAAAAATATTTTAAAAATTTATGGAAAAAAAGTAAA
AACTTTTAAAATTCATTATATTAGTTCTATTAGAGAAGGGCAAAGCATCACAAAAGCTTCAGTAGATTCAAGACCTAGAC
AAGGTGATTATGATAATGCTAAAGAAGCAGATAACTTAGTAATAAGCACAGATAGATTTGATTTTTGGGAAAAAATATCT
GAAGAAATTCAAGCTTTATTGGATGAGAATACATCAAAACCTATTATTAACATTAACGCAGGGATTATAACTTTAAATGC
AACACCATATGAGCTTGCAAGAGTTGAAAAATATTTATATGATTTGAATAATAGGCTTAAAAAGCAGGTGTTAATTGATG
TAAGTATAGTTGCAGTGCATTTAAATAAAAGTCATTCTAGTGGGATTAATTGGCAAGAACTTGCTATTAAACTAAATGGT
GATGATAATGATTTTATTATTAACAAAGGTGGAATTAGAAATATAAATTTAAAGGCTAATATAGAAACAAAGGCTATTTT
AAATTTATTACAGGAAAATGGAAAAACAACAGTGCTTTCTAATCCTAAATTAATGGCTTTAAATAATCAACAAGCTATTA
TTTCTATAGGAGATACTATAAATTATCAAGTAAAAGAAAGCTCTAAGGGTACTGAAAATGGAACAACTATTAGCGAAACT
TTTAATAATTATTCTATATTTGTAGGAATTTTGCTTAATATTTTACCAGAAATTTCAGATGATCATAAGATTATGCTTAG
GATAAATCCAAGTTTAAGTGATTTTAAATATAGTGTTGATAATTATCGTCAAAATAAACCTAGAAATATAGCTCCTGACA
CTATACAAAAAAAGCTTTCGACGGTGGTTGAGATTGATGATGGCCAGACTTTAATTTTAGGAGGATTGATTAGTAAAAAT
ACTATTACTAATAATAATGAAATTAGTGCTTTATCTAAAATACCACTTTTTGGATTTTTATTTCAAGGTAAACAAAATTT
ACAAGATAGTAGTGAAATTGTTTTTATTATTAAACCCAAACTAATTAAAGAAGATAGAAAAATTTTAAGTTTAAAAGAAT
TAGGTTTTGAACATGAAGATGGTATGTTTTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(269-443)

Secretin and TonB N terminus short domain (STN)

(66-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L5HM58

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

57.717

100

0.59