Detailed information NTG0447901

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HPY10_RS11180
• Genome accession: NZ_CP053822
• Coordinates: 2506166..2507173 (-)
• Length: 335 a.a.
• NCBI ID: WP_123011330.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain E7G
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2501166..2512173

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPY10_RS11170 (HPY10_11220)	cysM	2502329..2503216 (+)	888	WP_001914090.1	cysteine synthase CysM	-
HPY10_RS11175 (HPY10_11225)	mutS	2503484..2506072 (+)	2589	WP_071179763.1	DNA mismatch repair protein MutS	-
HPY10_RS11180 (HPY10_11230)	rpoS	2506166..2507173 (-)	1008	WP_123011330.1	RNA polymerase sigma factor RpoS	Regulator
HPY10_RS11185 (HPY10_11235)	nlpD	2507247..2508182 (-)	936	WP_000177559.1	murein hydrolase activator NlpD	-
HPY10_RS11190 (HPY10_11240)	-	2508182..2508808 (-)	627	WP_057550676.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HPY10_RS11195 (HPY10_11245)	surE	2508801..2509553 (-)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
HPY10_RS11200 (HPY10_11250)	truD	2509555..2510640 (-)	1086	WP_071179760.1	tRNA pseudouridine(13) synthase TruD	-
HPY10_RS11205 (HPY10_11255)	ispF	2510670..2511146 (-)	477	WP_000619207.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HPY10_RS11210 (HPY10_11260)	ispD	2511143..2511841 (-)	699	WP_001888653.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HPY10_RS11215 (HPY10_11265)	ftsB	2511838..2512122 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38564.42 Da
• Isoelectric Point: 4.3648

>NTDB_id=447901 HPY10_RS11180 WP_123011330.1 2506166..2507173(-) (rpoS) [Vibrio cholerae strain E7G]
MSVSNTVTKVEEFDFEDEALEVLETDTELASDEELVAVEGTSEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=447901 HPY10_RS11180 WP_123011330.1 2506166..2507173(-) (rpoS) [Vibrio cholerae strain E7G]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATAC
CGAGCTCGCCAGTGATGAAGAATTAGTTGCTGTTGAAGGGACAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACGCCAGAAGAAATTGCTCTTGAGTTAGATCGACCCGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGTGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAATTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCTCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATTCAAGTGGAAGGTCTGCGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	99.104	100	0.991