Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   HPY11_RS17475 Genome accession   NZ_CP053821
Coordinates   778264..779358 (-) Length   364 a.a.
NCBI ID   WP_001907859.1    Uniprot ID   Q25QW7
Organism   Vibrio cholerae strain SA10G     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 773264..784358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY11_RS17465 (HPY11_17580) - 775016..775681 (+) 666 WP_000268197.1 flagellar brake protein -
  HPY11_RS17470 (HPY11_17585) luxQ 775673..778246 (-) 2574 WP_001026310.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  HPY11_RS17475 (HPY11_17590) luxP 778264..779358 (-) 1095 WP_001907859.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  HPY11_RS17480 (HPY11_17595) traF 779570..780733 (-) 1164 Protein_753 conjugal transfer protein TraF -
  HPY11_RS17485 (HPY11_17600) - 780835..781140 (-) 306 WP_033932000.1 GIY-YIG nuclease family protein -
  HPY11_RS17490 (HPY11_17605) - 781140..781790 (-) 651 WP_033931999.1 YceH family protein -
  HPY11_RS17495 (HPY11_17610) - 781833..782030 (-) 198 WP_175246528.1 hypothetical protein -
  HPY11_RS17500 (HPY11_17615) - 782218..782538 (+) 321 WP_001089529.1 DUF496 family protein -
  HPY11_RS17505 (HPY11_17620) - 782930..783181 (+) 252 WP_017686428.1 YgjV family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41227.89 Da        Isoelectric Point: 6.5074

>NTDB_id=447868 HPY11_RS17475 WP_001907859.1 778264..779358(-) (luxP) [Vibrio cholerae strain SA10G]
MKRKLISPLFLMAALFSSTGQADSLKGYWHYDEFLAEFPEQRPISELFAQTVRDKPSALTVAQKQPVIISVVYPGQQISD
YWVRNIKAFEKRMDALGIRYQINQVFTRPNLDTRQQSVSLMEALKNKSDYLIFTLDTTRHRKFIEHVLHSSETKLILQNI
TTPVKDWQGKQPMMYIGFDHEYGAQLLAQYYQAHAPKKPYSVLYFSEGYISEARGDTFIQDMNEAHHFPLASSYYTKATE
QSGYEATLNIVKNNPEIGFIYACATDVALGAAQALKELNRQDILVNGWGGGSAELEALAKGELDVTVMRMNDDTGVAMAE
AIKWDLEGKAVPLVYSGDFEVVTKQDSAARIAELKARAFRYSDR

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=447868 HPY11_RS17475 WP_001907859.1 778264..779358(-) (luxP) [Vibrio cholerae strain SA10G]
ATGAAAAGAAAGCTAATATCCCCGCTGTTTCTGATGGCAGCGCTCTTCAGCTCAACTGGTCAAGCCGATTCATTAAAAGG
CTATTGGCATTATGATGAATTTCTTGCTGAGTTCCCTGAACAGCGGCCAATTTCCGAGCTTTTTGCTCAAACAGTTCGTG
ATAAACCGAGTGCGTTGACGGTGGCGCAAAAACAACCCGTTATTATTTCAGTGGTCTATCCCGGACAGCAAATTTCCGAC
TATTGGGTTCGCAATATCAAAGCGTTTGAAAAGCGAATGGACGCTTTAGGGATTCGCTATCAAATCAATCAGGTGTTTAC
TCGCCCAAATCTTGATACTCGCCAGCAGAGTGTTTCCTTGATGGAAGCGCTGAAAAATAAGAGCGATTATCTGATTTTTA
CCTTAGATACCACCCGTCACCGCAAATTCATTGAGCATGTGCTGCACTCCTCCGAAACGAAACTGATTTTGCAAAACATC
ACGACGCCAGTCAAAGATTGGCAAGGCAAGCAGCCCATGATGTACATCGGTTTTGATCATGAGTACGGCGCGCAATTATT
GGCGCAATATTACCAAGCACATGCCCCGAAAAAGCCGTACTCAGTACTTTATTTTTCCGAGGGGTATATCAGTGAAGCGC
GGGGAGACACCTTCATTCAAGATATGAACGAGGCGCACCATTTTCCGTTGGCTTCTTCCTATTACACCAAGGCAACCGAG
CAAAGTGGCTATGAAGCGACCCTAAACATCGTCAAGAATAATCCAGAAATTGGTTTTATTTACGCCTGTGCGACGGACGT
GGCTTTGGGAGCTGCGCAGGCACTGAAAGAGCTGAATCGACAAGATATTCTCGTCAATGGTTGGGGAGGCGGCTCGGCTG
AGCTTGAAGCGCTTGCCAAAGGAGAATTGGATGTCACTGTGATGCGTATGAATGACGATACGGGTGTGGCGATGGCCGAA
GCGATTAAATGGGATTTGGAAGGGAAAGCCGTACCTTTGGTCTATTCAGGCGATTTTGAAGTGGTCACCAAACAAGATTC
AGCAGCGCGTATTGCAGAACTGAAAGCTCGGGCTTTCCGTTATTCGGATCGTTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q25QW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

98.626

100

0.986