Detailed information NTG0447855

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HPY11_RS11255
• Genome accession: NZ_CP053820
• Coordinates: 2519892..2520899 (-)
• Length: 335 a.a.
• NCBI ID: WP_123011330.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain SA10G
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2514892..2525899

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPY11_RS11245 (HPY11_11295)	cysM	2516055..2516942 (+)	888	WP_001914090.1	cysteine synthase CysM	-
HPY11_RS11250 (HPY11_11300)	mutS	2517210..2519798 (+)	2589	WP_071179763.1	DNA mismatch repair protein MutS	-
HPY11_RS11255 (HPY11_11305)	rpoS	2519892..2520899 (-)	1008	WP_123011330.1	RNA polymerase sigma factor RpoS	Regulator
HPY11_RS11260 (HPY11_11310)	nlpD	2520973..2521908 (-)	936	WP_000177559.1	murein hydrolase activator NlpD	-
HPY11_RS11265 (HPY11_11315)	-	2521908..2522534 (-)	627	WP_057550676.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HPY11_RS11270 (HPY11_11320)	surE	2522527..2523279 (-)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
HPY11_RS11275 (HPY11_11325)	truD	2523281..2524366 (-)	1086	WP_071179760.1	tRNA pseudouridine(13) synthase TruD	-
HPY11_RS11280 (HPY11_11330)	ispF	2524396..2524872 (-)	477	WP_000619207.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HPY11_RS11285 (HPY11_11335)	ispD	2524869..2525567 (-)	699	WP_175246212.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HPY11_RS11290 (HPY11_11340)	ftsB	2525564..2525848 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38564.42 Da
• Isoelectric Point: 4.3648

>NTDB_id=447855 HPY11_RS11255 WP_123011330.1 2519892..2520899(-) (rpoS) [Vibrio cholerae strain SA10G]
MSVSNTVTKVEEFDFEDEALEVLETDTELASDEELVAVEGTSEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=447855 HPY11_RS11255 WP_123011330.1 2519892..2520899(-) (rpoS) [Vibrio cholerae strain SA10G]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATAC
CGAGCTCGCCAGTGATGAAGAATTAGTTGCTGTTGAAGGGACAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACGCCAGAAGAAATTGCTCTTGAGTTAGATCGACCCGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGTGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAATTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCTCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATTCAAGTGGAAGGTCTGCGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	99.104	100	0.991