Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   HPY11_RS01455 Genome accession   NZ_CP053820
Coordinates   303920..304438 (+) Length   172 a.a.
NCBI ID   WP_032472751.1    Uniprot ID   -
Organism   Vibrio cholerae strain SA10G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 298920..309438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY11_RS01435 (HPY11_01435) - 299137..301614 (-) 2478 WP_000668739.1 penicillin-binding protein 1A -
  HPY11_RS01440 (HPY11_01440) pilM 301757..302773 (+) 1017 WP_071171299.1 type IV pilus assembly protein PilM Machinery gene
  HPY11_RS01445 (HPY11_01445) pilN 302763..303347 (+) 585 WP_000902746.1 PilN domain-containing protein Machinery gene
  HPY11_RS01450 (HPY11_01450) pilO 303340..303930 (+) 591 WP_000157690.1 type 4a pilus biogenesis protein PilO Machinery gene
  HPY11_RS01455 (HPY11_01455) pilP 303920..304438 (+) 519 WP_032472751.1 pilus assembly protein PilP Machinery gene
  HPY11_RS01460 (HPY11_01460) pilQ 304464..306179 (+) 1716 WP_175245885.1 type IV pilus secretin PilQ Machinery gene
  HPY11_RS01465 (HPY11_01465) aroK 306366..306890 (+) 525 WP_000818616.1 shikimate kinase AroK -
  HPY11_RS01470 (HPY11_01470) aroB 306918..308003 (+) 1086 WP_175245886.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19112.31 Da        Isoelectric Point: 10.0857

>NTDB_id=447830 HPY11_RS01455 WP_032472751.1 303920..304438(+) (pilP) [Vibrio cholerae strain SA10G]
MKNKPLGLWLMSLLVLVGCKANQDDLTSYVAQVEREARKEVTKLKPILEFEVTPYQQHKGREPFVLPKEALVQNQPLAKA
DCWQPVPRAKNGPLERYPLHQLRLKGVMSSGGSISALVQTPAGSVVKVKAGQYVGINNGKVTRVDDNYLLINETLPDGLG
CWNQRNVKLALK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=447830 HPY11_RS01455 WP_032472751.1 303920..304438(+) (pilP) [Vibrio cholerae strain SA10G]
ATGAAAAATAAGCCACTTGGATTATGGCTGATGAGTTTGCTGGTGTTGGTCGGGTGTAAAGCGAACCAAGATGATTTGAC
CTCATACGTCGCGCAAGTTGAGCGTGAAGCGCGCAAAGAAGTGACTAAGCTCAAACCCATTTTAGAGTTTGAAGTCACGC
CCTATCAGCAGCACAAGGGGCGTGAGCCGTTTGTCTTACCGAAAGAAGCGTTAGTGCAAAACCAACCGCTGGCCAAAGCC
GACTGTTGGCAACCCGTGCCACGTGCGAAAAATGGGCCTTTGGAGCGTTATCCATTGCACCAATTGCGCTTAAAAGGGGT
GATGAGCAGCGGGGGCAGTATCTCTGCCTTAGTGCAAACGCCGGCAGGGAGTGTGGTCAAGGTTAAGGCGGGTCAATATG
TCGGAATTAATAATGGCAAAGTCACCCGAGTCGACGACAACTATTTGTTAATTAATGAAACTTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

99.419

100

0.994
  pilP Vibrio campbellii strain DS40M4

56.977

100

0.57