Detailed information NTG0447807

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HPY17_RS11185
• Genome accession: NZ_CP053816
• Coordinates: 2510285..2511292 (-)
• Length: 335 a.a.
• NCBI ID: WP_123011330.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain SA7G
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2505285..2516292

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPY17_RS11175 (HPY17_11180)	cysM	2506448..2507335 (+)	888	WP_001914090.1	cysteine synthase CysM	-
HPY17_RS11180 (HPY17_11185)	mutS	2507603..2510191 (+)	2589	WP_071179763.1	DNA mismatch repair protein MutS	-
HPY17_RS11185 (HPY17_11190)	rpoS	2510285..2511292 (-)	1008	WP_123011330.1	RNA polymerase sigma factor RpoS	Regulator
HPY17_RS11190 (HPY17_11195)	nlpD	2511366..2512301 (-)	936	WP_000177559.1	murein hydrolase activator NlpD	-
HPY17_RS11195 (HPY17_11200)	-	2512301..2512927 (-)	627	WP_057550676.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HPY17_RS11200 (HPY17_11205)	surE	2512920..2513672 (-)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
HPY17_RS11205 (HPY17_11210)	truD	2513674..2514759 (-)	1086	WP_071179760.1	tRNA pseudouridine(13) synthase TruD	-
HPY17_RS11210 (HPY17_11215)	ispF	2514789..2515265 (-)	477	WP_000619207.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HPY17_RS11215 (HPY17_11220)	ispD	2515262..2515960 (-)	699	WP_001888653.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HPY17_RS11220 (HPY17_11225)	ftsB	2515957..2516241 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38564.42 Da
• Isoelectric Point: 4.3648

>NTDB_id=447807 HPY17_RS11185 WP_123011330.1 2510285..2511292(-) (rpoS) [Vibrio cholerae strain SA7G]
MSVSNTVTKVEEFDFEDEALEVLETDTELASDEELVAVEGTSEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=447807 HPY17_RS11185 WP_123011330.1 2510285..2511292(-) (rpoS) [Vibrio cholerae strain SA7G]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATAC
CGAGCTCGCCAGTGATGAAGAATTAGTTGCTGTTGAAGGGACAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACGCCAGAAGAAATTGCTCTTGAGTTAGATCGACCCGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGTGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAATTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCTCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATTCAAGTGGAAGGTCTGCGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	99.104	100	0.991