Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HPY17_RS11045 Genome accession   NZ_CP053816
Coordinates   2483799..2484317 (-) Length   172 a.a.
NCBI ID   WP_175246206.1    Uniprot ID   -
Organism   Vibrio cholerae strain SA7G     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2478799..2489317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY17_RS11020 (HPY17_11025) rimM 2478908..2479462 (-) 555 WP_175246205.1 ribosome maturation factor RimM -
  HPY17_RS11025 (HPY17_11030) rpsP 2479490..2479738 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  HPY17_RS11030 (HPY17_11035) ffh 2479974..2481359 (-) 1386 WP_114708661.1 signal recognition particle protein -
  HPY17_RS11035 (HPY17_11040) - 2481572..2482366 (+) 795 WP_000369278.1 inner membrane protein YpjD -
  HPY17_RS11040 (HPY17_11045) - 2482449..2483729 (+) 1281 WP_000340990.1 HlyC/CorC family transporter -
  HPY17_RS11045 (HPY17_11050) luxS 2483799..2484317 (-) 519 WP_175246206.1 S-ribosylhomocysteine lyase Regulator
  HPY17_RS11050 (HPY17_11055) gshA 2484366..2485940 (-) 1575 WP_175246207.1 glutamate--cysteine ligase -
  HPY17_RS11055 (HPY17_11060) - 2486052..2488907 (-) 2856 WP_069216314.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19108.02 Da        Isoelectric Point: 5.9127

>NTDB_id=447804 HPY17_RS11045 WP_175246206.1 2483799..2484317(-) (luxS) [Vibrio cholerae strain SA7G]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKVIAKNVIAAGISVNRNDELA
LPESMLNKLKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=447804 HPY17_RS11045 WP_175246206.1 2483799..2484317(-) (luxS) [Vibrio cholerae strain SA7G]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACCCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACAATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGCAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTATTGAAAGTTGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTGGAAGAAGCCAAAGTGATTGCGAAAAACGTGATTGCGGCAGGCATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATAAGCTCAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

98.837

100

0.988